Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1050 ATGGAAACCATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTAACAGTTAACATGGGAGCATCACTTCAACCATTAATACCACCTCATCAAGAATATCATCATCAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAGCTGCAAAGAACTGGGATCATCATCTTCAAAATGTAACAAAATTGCGCCATTTGAGCCTGTAGAGAGTCATCAATCACCTAGGATTCCTCCCATTCGTCCTCCGGAGAAGAGACAACGTGTTCCATCTGCTTATAACCGATTCATTAAGGAGGAAATTCAAAGGATCAAGGCCAGTAATCCAGATATTAGCCACAGGGAAGCTTTCAGCACAGCTGCTAAAAACTGGGCACATTTCCCTCATATTCACTTTGGATTAAAGATGGATGGCAATAATGACAAGCAAGCAAAGTTGGACCATAATAACGGTGAAGGAACTCAAAAGTCTAATAATGGATTCTACTGA 576 0.4149 METMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQEYHHQKQHLSFEESSSCKELGSSSSKCNKIAPFEPVESHQSPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKMDGNNDKQAKLDHNNGEGTQKSNNGFY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1050 191 SUPERFAMILY HMG-box 107 156 IPR036910 -
Ahy3g1050 191 PANTHER PROTEIN YABBY 6-RELATED 5 191 IPR006780 GO:0007275
Ahy3g1050 191 MobiDBLite consensus disorder prediction 165 191 - -
Ahy3g1050 191 MobiDBLite consensus disorder prediction 97 118 - -
Ahy3g1050 191 Pfam YABBY protein 6 163 IPR006780 GO:0007275
Ahy3g1050 191 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 5 191 - -
Ahy3g1050 191 Gene3D High mobility group box domain 101 158 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1050 Ahy-Chr3 12931708 12942101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1050 1 191 C2C2-YABBY Transcription Factor Family AT1G08465 63.212 2.07e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy3g1050 YABBY 4.20E-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1050 K25796 - gmx:100500026 277.715