Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1024 ATGGCAGAAACTGAGATTCCTGAATATTTTCTTTGCCCAATTTCCCTTGAGATGATGAAGGAGCCTGTGACTGCGGTAACAGGCATCACATACGAAAGAGAAAGCATTGAGCAATGGCTGCGGAAGGCGAAAGAGTGCGTTTGCCCCGTGACGAAGCAGCCATTGCCGCGAAGCTCACAATATTTGACCCCAAATCACACTTTAAGGAGACTGATTCAGGCATGGAGTGAAGCCACTAATAATGCAGCTAGAGGCCACGGTGCTGATCATCAACAGATTCCAAATCCGCAGTTGGAGAAGGTGCAAGTTGAGAAGCTAGTGAAGGATCTTAAGGTTCCTCATAGGAATCAAAGAGCGCTGAAGAAGTTGCATGGTTTTGCCATGGAAAGTGAGAGGACTAGAACTTGCATGGCTGAAGCTGGTGTTGCTAATGCCATGGTTATCTTCATTAACCAGCGTTTCCAACAAGGTAAGACAATGTGCCTAGAAGAAGCTCTAAGAATTCTTCATCTTACTTGGAATATACCATCAAGGACCAACATGAAGGCTCTTGTTGGAGAAAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCACCTTAACGTGCACAACAACAACGTTAAGATAGTAAACGAAGCAATGCCTTTATTGAAGTTGACAATTCAAAACACAAATTCAACCATCTTAGGGAACTTGAACTTCCAATTCTTCAAGGAAATGGTGAGAGTATTGGGAAAAAGAACAATATCTCAACAAGCCCTAAAATCCACCTTGCAAATCCTCATAGAAACATGCCCTTTGGGCAGGAATCGAAAGAGCATTGTCGAGTCGGGTGCAGTTTCAAACCTAATCGAACTTGAACTTGAAAAACCGGAGAAAAACATCTCCGAACATATATTCAACCTTCTAGCACATCTATGTTCATGTGCTGAAGGTAGAGAAATGTTTCTTAAACATGCCGCGGCAATAGCAATGGTTTCTAAGAGGATTCTTAGGGTTTCTTCCGCGACGGACGACCGGGCGATCCATATTTTATCGGTGATCGGAAAATATTCGGGATCAAGTGAGGTTGTTCTTGAGATGCTTAGGGTTGGTGCAGTGTCCAAGCTTTGCATGGTGATTCAAGCAGATTGTGCATCTTATTTGAAAGAGAAAGCAAGGGGTATACTTAGGTTGCATTCCAAAGTTTGGAGTGATTCACCTTGCATACAACTCTACTTATTAACTAGGTACCAAAGATAG 1245 0.4273 MAETEIPEYFLCPISLEMMKEPVTAVTGITYERESIEQWLRKAKECVCPVTKQPLPRSSQYLTPNHTLRRLIQAWSEATNNAARGHGADHQQIPNPQLEKVQVEKLVKDLKVPHRNQRALKKLHGFAMESERTRTCMAEAGVANAMVIFINQRFQQGKTMCLEEALRILHLTWNIPSRTNMKALVGENLDFINSLTWILHLNVHNNNVKIVNEAMPLLKLTIQNTNSTILGNLNFQFFKEMVRVLGKRTISQQALKSTLQILIETCPLGRNRKSIVESGAVSNLIELELEKPEKNISEHIFNLLAHLCSCAEGREMFLKHAAAIAMVSKRILRVSSATDDRAIHILSVIGKYSGSSEVVLEMLRVGAVSKLCMVIQADCASYLKEKARGILRLHSKVWSDSPCIQLYLLTRYQR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1024 414 PANTHER WDSAM1 PROTEIN 3 412 IPR045185 GO:0061630
Ahy3g1024 414 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Ahy3g1024 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Ahy3g1024 414 SUPERFAMILY ARM repeat 204 379 IPR016024 -
Ahy3g1024 414 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Ahy3g1024 414 Gene3D - 92 401 IPR011989 -
Ahy3g1024 414 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Ahy3g1024 414 SUPERFAMILY RING/U-box 3 82 - -
Ahy3g1024 414 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ahy3g1024 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1024 Ahy-Chr3 12485703 12488207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1024 3 412 U-box Gene Family AT2G35930 39.372 2.05e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1024 - - gmx:100811293 541.191