Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1002 ATGACATCCAATAACCCTTACGAAATCATAGACGATGATGATGAGGGGTTTGATTGGGAAGCAGCTGCAAGAGAAATCGACGTCGTTTGCCAACAAAGCAAGTGTGTTAGCAGCAGTGGCTGTGATGCAAAGGGGAAGGCGAAGGCGAAGGGAAACAATGGCGACTCATCCCGGCAATCCACTCTCGATCAGTTTGTGGTCACTGCCAAGAAGGAAGCCCCGGTGCTTCAGGCCCAACACGAAGAAGAAGTCCCAACCTCTGCCTCCATCCACCACATTGATGCCGACGCAGCCAAAACTTGGATATACCCTGTTAATGTTCCTCTCCGTGACTATCAATTTGCCATCACGAAATCCGCACTTTTTTCAAACACATTGGTGGCATTGCCAACAGGATTAGGCAAGACACTCATCGCTGCTGTTGTTATGTATAACTACTTCAGATGGTTTCCTCAAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTTGGAATACCCCAGAAATGGACAATTGATATGACGGGTCAAATAAGTCCTCCCAAAAGAGCTTGTTTTTGGAAAACAAAGCGGGTTTTCTTTGTCACCCCACAAGTGTTGGAGAAAGATATTCATTCTGGTATATGCTTAGTAAAGTACTTGGTGTGTTTGGTTATTGATGAAGCTCACAGAGCTACAGGAAATTACTCTTATTGTGAAGCTGTTCGTGAGCTGATGGCTGTACCAGTGCAACTTAGAATATTAGCATTAACTGCAACCCCAGGATCAAAGAAGCAGACAGTCCAGCATGTTATTGATAATCTTCATGTCTCCAAGCTTGAATATCGCAGTGAGGTTAACCATGACGTTATCCCATATGTTCATAACAGGAAGATAGAGTTGGTAGAGGTTGCAATGGGCCAAGATGCTGCAGAAATAAATGATAAGCTTTTGGATGTCATACGTCCAATAGTAGCAAGGCTTAATGATATTGGGGTCATTCAGAATAGAAATTATCGTACTTTGAGCCCTTGTACGTTACTTGAAATAAGGGAAAAGTTCCGTCAAGGACATAGGCAAGACCTTTCTAATATCAACAATGTAGATGTCGAAGGGTATTTTGGGGTTCTTATCACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAGTAAGGCCAGCACAAGAAATGCTTGAAAGAAAATTGAAGCAAGGATTTTTCGCAAAATATATGAGTAAAAATGAAGTTATGCTGAAAGCAAGGCAACTGATGCAGCAAAGCTTGTCTCATGGAGCATCTAGTCCTAAGCTCTCCAAAATGCTAGAAGTACTACATGATCATTTCAAAACCAATGATCCCAAAAGTTCAAGGGTAATTATCTTCTCCAATTATAGAGAAAGTGTCAGGGACATTATGGGTGCACTTGGAAACATTGGGGAACCAGTCAGAGCTACAGAGTTTATTGGTCAAAGTTCAGGGAAAGCAATGAAAGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCCGGTGCCTACAATGTTATTGTTGCTACATCAATCGGTGAAGAAGGTCTAGATATAATGGAAGTTGATCTTGTCATATCTTTTGATGCAAATATTTCACCACTTAGAATGATTCAGCGAATGGGAAGAACTGGAAGAAAGCATGATGGACGAGTTGTAATTTTAGCTTGTGAAGGGTCAGAGTTGAACGGCTACTTGCGGAAGAAGGCAAAGAGCAAGGGTATAAGTAAACACATGCGAAATGGGGGTGTAGATAGCTTCAACTTTCATCCTAGTCCAAGAATGATTCCCCATGTCTTCAAACCTGAAGTTCAATATGTTGAGATGTCAATTGAGAAATTTATTCCCCGTGAAAAGAATGTGAAAGATGTCCCTCTTCCAATTTCTCCATCCAAAGATAAACTCACTGTTGCTGAAATGGATTTACTTAAAATGTATTTCCATTCTACTGAGGAAAATACAAGTAGATTGTCTCTCATTGCCTTTCCTTACTTTCAAACCTTTCCTTCTAGAGTTCATAAAGTGAACCATTCCCTTAGAACAATGATGCTTATAGACGCAATGCAGCATTTGCAAGGATTAGAAACGTGTCCAGGAAATGACAAAACTACTCTTCAGGAAGGTTCGTGTTTAGGAAATAGCAAGCCGTTTTCCATTTCTGAGGCCAAACATGACACTGAATCATGCTATAGGCATACAATGGAAAGGAATGTTGACACCGTAAATTGTATGAACTTGGATTCCCATCCTTTGAGGATTAAAACCAAAGATACTATTGATCTAACTATACAAGAAGATAGTACTTTCGATGACTTGATTGAGCATGAAGAGGATTCACTCCAGGGTGATGAGATAGTTCCCGAGACTCCGGTTGCTAATAAAAGTGCATCAAATGGAGGAGATGATGCTGGTGAAACGACCAACCTTGTGGTCAAGACTTCATTGTTTCCAGAAGATGTATGCATTAATGGCATTAGAGAAGGAGAATTTAGTCCTCGCTTAACTGATTTCATTACAAGTGGTGTTGTTCCAGAGTCTCCAGTTGATGATGAACAAGAGAAATCAAGAGGCAAGTCTGTAATTCGAGACTGTATTTTGCCTGTTCGACTCCACGAAGAACAGGATACGAGTCCCTTGAGTTCTATGCGAAGTGAAAAAGTTGTAATTGAGGGCAGTACTGGCAAGAATGTCTCTAATTCTCCAGTAGATAATGGAACTCGAACTCCTTTACTTGAGCTGAAGAATTCTGCAATTAAAAGACGACGCATCATTATTTCCCAAACTGAGGAAGGTCACTCACACATGTCTGACCCAAGCTTCAGGGAAGAATCACATTTAAGCTCTGGTAAAATGCCTGGAACTGCAAGCATTCAACCTTTGCGCAAATTTAAAAGGTTGCGGAAAGCTGCAGATGGTGACAGCAAAGCTAATCAGGAAAACAATGATCCCATCCGATATAAGCATGTTCAAAGTCATTTTGGTAAAAGGAAATCAACAAATGATGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTCTCTGCAGAGGCAAATGTATCTAGTGACGAAGATGGAGAAGATGATGTTTCTTATGACAATTTCATTGATGACAGGACAAATCCTATAGGAGAAAGTCAGCCTGAAGTTAGTAGAGTGGACATGATGGCAATTTACAGGCGTTCTTTGCTTAGTCAAACGCAGATAAATGGAAGTTACAGCTCTTCTGCCATGTTCAGCCCTGACAGTGTGACTAATGGAAGTGGGAGCTCTTCAGGCAAGACAGTAATGAGTCATGTTCATGGCAACTGCATAGACCAAGAAAAAGTGCCATCAACTAGTTCCCTTACAGGAAACGTTACAAGTCGTAAAAGATTATCCCTTTATCATTCAGGAGGACACCTTCCAACTATGAACCTTGAACAAGAATTTGCACTTCAATCAAAGAAAGACTTGGTGGATGCCCCTGATTTTACTGTGGATTATCAATGTGATGATCAATTTTATAACGACCTTGATCTTGATGAGCTGGAGGCACAAGCAATCTCACTTCATAAAAAGAAATTAAGTTTGTCAACTCAGAAGCAAGATGCAATCCCTCTACCTCCCTCTCTGAAGGAAGATAGCTTTTGGGCTCCATCGTTTGACCTTGGCATATGA 3708 0.4102 MTSNNPYEIIDDDDEGFDWEAAAREIDVVCQQSKCVSSSGCDAKGKAKAKGNNGDSSRQSTLDQFVVTAKKEAPVLQAQHEEEVPTSASIHHIDADAAKTWIYPVNVPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQKWTIDMTGQISPPKRACFWKTKRVFFVTPQVLEKDIHSGICLVKYLVCLVIDEAHRATGNYSYCEAVRELMAVPVQLRILALTATPGSKKQTVQHVIDNLHVSKLEYRSEVNHDVIPYVHNRKIELVEVAMGQDAAEINDKLLDVIRPIVARLNDIGVIQNRNYRTLSPCTLLEIREKFRQGHRQDLSNINNVDVEGYFGVLITLYYIHKLLSSHGVRPAQEMLERKLKQGFFAKYMSKNEVMLKARQLMQQSLSHGASSPKLSKMLEVLHDHFKTNDPKSSRVIIFSNYRESVRDIMGALGNIGEPVRATEFIGQSSGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVILACEGSELNGYLRKKAKSKGISKHMRNGGVDSFNFHPSPRMIPHVFKPEVQYVEMSIEKFIPREKNVKDVPLPISPSKDKLTVAEMDLLKMYFHSTEENTSRLSLIAFPYFQTFPSRVHKVNHSLRTMMLIDAMQHLQGLETCPGNDKTTLQEGSCLGNSKPFSISEAKHDTESCYRHTMERNVDTVNCMNLDSHPLRIKTKDTIDLTIQEDSTFDDLIEHEEDSLQGDEIVPETPVANKSASNGGDDAGETTNLVVKTSLFPEDVCINGIREGEFSPRLTDFITSGVVPESPVDDEQEKSRGKSVIRDCILPVRLHEEQDTSPLSSMRSEKVVIEGSTGKNVSNSPVDNGTRTPLLELKNSAIKRRRIIISQTEEGHSHMSDPSFREESHLSSGKMPGTASIQPLRKFKRLRKAADGDSKANQENNDPIRYKHVQSHFGKRKSTNDVRDFIEEEAEVSAEANVSSDEDGEDDVSYDNFIDDRTNPIGESQPEVSRVDMMAIYRRSLLSQTQINGSYSSSAMFSPDSVTNGSGSSSGKTVMSHVHGNCIDQEKVPSTSSLTGNVTSRKRLSLYHSGGHLPTMNLEQEFALQSKKDLVDAPDFTVDYQCDDQFYNDLDLDELEAQAISLHKKKLSLSTQKQDAIPLPPSLKEDSFWAPSFDLGI* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1002 1235 CDD SF2_C_FANCM_Hef 440 574 - -
Ahy3g1002 1235 MobiDBLite consensus disorder prediction 982 1028 - -
Ahy3g1002 1235 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 1199 - -
Ahy3g1002 1235 MobiDBLite consensus disorder prediction 946 962 - -
Ahy3g1002 1235 Pfam Helicase conserved C-terminal domain 448 565 IPR001650 -
Ahy3g1002 1235 Pfam Type III restriction enzyme, res subunit 122 266 IPR006935 GO:0003677|GO:0005524|GO:0016787
Ahy3g1002 1235 MobiDBLite consensus disorder prediction 37 59 - -
Ahy3g1002 1235 SMART helicmild6 476 566 IPR001650 -
Ahy3g1002 1235 Gene3D hef helicase domain 313 434 - -
Ahy3g1002 1235 Gene3D - 435 600 IPR027417 -
Ahy3g1002 1235 CDD DEXDc_FANCM 107 288 IPR044749 GO:0005524
Ahy3g1002 1235 MobiDBLite consensus disorder prediction 946 1062 - -
Ahy3g1002 1235 CDD FANCM_ID 316 423 - -
Ahy3g1002 1235 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 442 613 IPR001650 -
Ahy3g1002 1235 Gene3D - 105 299 IPR027417 -
Ahy3g1002 1235 PANTHER FANCONI ANEMIA GROUP M PROTEIN 16 1199 IPR039686 GO:0006281|GO:0043138
Ahy3g1002 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 284 IPR014001 -
Ahy3g1002 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 578 IPR027417 -
Ahy3g1002 1235 SMART ultradead3 105 305 IPR014001 -
Ahy3g1002 1235 MobiDBLite consensus disorder prediction 1032 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1002 Ahy-Chr3 11838404 11849098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1002 415 564 Eukaryotic Initiation Factors Gene Family AT3G13920 27.632 2.31e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1002 K10896 - gmx:100820078 1492.25