Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0980 ATGGCCCAACAGTCATCTAGGCTTCAGCGGTTGCTTACTCTGTTGGATACTGGGTCAACCCAAGCGACAAGGTTGACTGCTGCTCGTCAGATAGGGGAAATTGCAAAATCACACCCTCAAGACTTGAACAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGCAAAAATTGGGAGACAAGAGTCGCTGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAACACACAAGTTTGAATGAACTTACTACATCTGTTGTATCAAAAATATCTGAGAATGGGATATCATGTAGTGTTGAGGATCTTTGTGCATGGACATATTTGCAATCAAGAATTACAGGAAGCTCATTTAGAAGTTTTGACATGAGCAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGAGGACAGGAATATGATATTGTAAGTGATAATATAAAGAACCCAAAGGAGCGACTGGTACGCCAAAAGCAAAATCTTCGACGCCGTTTAGGTTTGGATGTTTGTGAACAATTTATGGATATGAGTGATGTAATAAGAGATGAAGATCTTATGACACACAAGTCAGATTCACATCCCAATGGAATAGATCATGGAGTTTTTACTTCTTCTTCTGTGCATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTCTAAAGCGCAAAGCAAAAATAAACTCAAAGGACCAGACAAAAAGCTGGGTCGAAGATGGTGTTACCGATCCATCAGGTGCTCAGAATTCGGCTTCGAAAGCCACGTATCCTGAGTCAGTTAATTACAATAAGGTATTCATGGATGTTAATCATGATGATGATGGCCTTGACCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTTGATCCAGTTTGGGAGATCCGACATGGTAGTGTGATGGCACTGAGAGAAATTTTAACACATCAAGGTGCTTCTGCTGGGGTATTGAAACATGACTTACGCTTGGGTGGGAACTTTATGGTCGAATTAGAAGACAAAAGTATAACTATTGAAAAAAAAGAAGACAGTAGTATGTCAAATATATTGAAGAGAGAGAGGGAGATTGATTTGAATATGCAAGTTTCTGCAGATGAGTTTGACTCAAACTTGAAGAGACCAAAACTTGAAAATGTAACATCATCAACCTCGATGGATAGTCTAATTACTTGCAGCAATGAAGGTGATACTAAAATCAGCATTAGTTCTGAAACCTCTGGGTACAATTTACCTTTGGATTGTGTAAATGGGCAATTTAATTGTAATTCTGTTGAGATGGATGTGGTATCTTTCTCTGATGGACTGCAAGATGCATGCAAGGAACCTACTATTGTAGCAGAGCAGAAGGGTTATTCTGAAGAGATTCCCTCCAGAAATCTTAATGTGCTGAGAAATGTTCCCCAGAATTCTGAGCTGATGAGCATGGTTAAAGTTGCCAGAAGTTCATGGTTGCGAAACTCTGGATTTCTTCAAGATTGTGTGATACGCTTTTTGTGTGTGTTGTCACTAGACCGCTTTGGAGATTATGTATCCGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCGGCATTTAAGTACATGCATCCGGCACTGGTAAATGAAACATTGAATATATTGTTGAAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGAAGTCTTCTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGTTGCTACCTGACTTGCTTGGACTTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCGGATGATGATGTCCGAGCTGTTGCTGCTGATGCCTTAATACCAGCTTCAGCTGCAATCGTTGCATTGCAGGGTCCAACATTGCGCACAATTGTGATGCTGCTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTTATGAATTTGCTGTCAGAAATTTATTCTCAAGAAGAGATGGTCCCAATGATGTATGAAGTTCTTAGATTGGGAGACAACGGAATATCTATTCAAAATGGAGTCGGGGGTGGTGGTGATGATGATGATGATGAAGAAGAAAATCCTTATGTGCTTTCAACGTTGGCACCACGTTTGTGGCCTTTTATGAGGCATAGTATCAGCTCTGTCCGGTATTCAGCAATGCGGACTCTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGAATGTCCGAGTTGTCTAATGCTTCGTTTTGGCCCTCTATCATATTTGGAGATACCCTTAGAATTGTATTTCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCAGAGAGAGTGTGGAGTCTCCTTGTTAAGTGTTCTGTGGAGGACTTGGATACTGCTGCGAGATCTTACATGGCTTCTTGGATAGAACTTGCTTCTACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGCTGCATTTCCAAGGAAAAGTCAATTTAGAGCTGCTGCTAAAATGAGAGCTGTGAAGTCTGAATATGATTATGGTGGGGATTTTGGTCTTGATTCTACAAAAGGATCTGTTCCACAAGAAAGAAATGGTGATGCTGCTATGGATTCAGTGAAGATAGTTGTTGGTGCTGATGTGGACACATCTGTTACTCATACACGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGGATTCTTTGAAGTATGTTGTTGATCCACTCTGGAGGTCTCTAACCTCTTTGTCTGGTGTTCAACGTCAGGTTGCATCTATGGTACTCATTTCTTGGTTCAAGGAGATTAAGAGGACAAATTCATCCAAAAATCTTGATGGCATTCCTGGAGCCCTCAAAGATTGGTTGCTGGACTTGTTAGGATGCTCTGATCCTGCATTGCCTACAAAAGATTCACTTCTTCCATATGCTGAACTTTCAAGAACTTATTCAAAGATGCGTAATGAGGCTGGTCAATTGCTAAATGCTATCAAGTCTTCTGGTATGTTTGATGAGTTATTGTCAACTACCAAAATTGAGTTGGATAGCTTGAGTGTGGATGGTGCCATTAGTTTTGCATCAAAAGTTCCAGCAGTGTGTAATGATAGTTCTCTGAATGAGTCCTTGATAAAGAATACTTTAGATGATATAGAATCCACAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTGCAGAGTAATTTGCATGTTACAGTCTCATCTGCAGTTGCAGCTGCTGTTGTTTGGATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAGCTAATATATCATTGTGTTGCTCGTAGGCCATGCCCAAATGATAAGTTAATTAAAAATATATGCAGTATGACATGCTTGGATCCTTCCGAGACCCCTCAAGCTAAACTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCGTTTGGAACTCCTGTGAGCAAACATAAATCAAAGGTCCATGTTTTGGCTGGTGAAGATCGATCAAAAGTGGAAGGGTTCATAAGTAGACGTGGGTCGGAATTAGCGTTGAGGCTTTTGTGCGAGAAGTTTGGTGCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAACCTAGCTCCTCTGAATCTCCAGCAGTCACTAATGAAAAACAAGCTACTATGGCTGTTGAGTCTATTAGTGATCCCCAGATATTGATTAACAATATTCAGGTGGTACGATCTATTGCGCCCTTGTTAAATGAGGAGTTAAAGCCAAAATTATTGACACTTCTCCCGTGCATTTTTAAATGCATTCAACATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCTGTGGTTGAAAATGCTATCCCAATGTTGGAAGATGCATCATCAGTTCATGCTCGTCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGGGTAGAGTTGGTCCCTTACGCTCCATTGTTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTCAGGCAGAGTGTGACCCATAGTTTTGCTGCTCTTGTGCCTTTACTTCCTTTGGCACGAGGCCTTCCTCAACCAGTTGGATTGGGGGAAGGTATATCTAGAAATGCTGATGATTTGCAATTTTTGGAGCAACTGCTTGACAACTCCCACATTGAAGATTACAAGTTATGCACTGAATTGAAAGTCACATTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACGCTTCAGTCATCGGCTATTGTGGCCTCTGATATTGCTGAGCATCGAACTCAGTCTGGGAATGGAGATCTTCTACCATCTTTGATTATTTGCCCATCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAATATATTGATGTTTCAGTTATATCTTGTCTTCAGTACGTTGGTTCTGCTCAGGACCGAATGATTCTTCGAGATCATTTTTGCAAGCATAACGTCATTATAACATCATATGATGTTGTCCGTAAAGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCGCTTGATATTGAGTGGAACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCGCTTTTAGCTGCTAGAGATCCAAAATGCTCAGCCAAAGATGCCGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTAGAACAAAGGATGAGGTCTTATCTGATCTTCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATTTAAACTCTATGAACAGTTTTCTGGTTCTCACGTAAAACAAGAAATGTCATCTATTGTGACAACGAATGAGTCAGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATACTTGCTGAAGCTGTGTAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCACTTTCGACCATCCTCTCCGGAGTGTTACCGGGTGTTTCTGACATCATTTCAGAACTTCACAACCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACGTTGGGCAGCACAGGGTATTGATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAGAGATTTGTTTCAGACACACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGATCCTACCATTGATGTCTTACTGCTTACAACACACGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTAATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACTATGAATACGGATCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAAGAAGGGTTCTTCTGCCGGGAAGAGTTTGGAAAACAACCCTGAAGGAGACGCTAAACTAGTAGGTACCGGAAAGGGGCTGAAAGCCATACTTGGGGGATTGGAAGAGCTATGGGACCAATCACAATACACAGAAGAGTACAATCTAAATCAATTCTTAGCAAAACTAAATGGTTAA 6189 0.4138 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGEIAKSHPQDLNSLLKKVSQYLRSKNWETRVAAAHAIGSIAENVKHTSLNELTTSVVSKISENGISCSVEDLCAWTYLQSRITGSSFRSFDMSKVLEFGALLASGGQEYDIVSDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDMSDVIRDEDLMTHKSDSHPNGIDHGVFTSSSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWVEDGVTDPSGAQNSASKATYPESVNYNKVFMDVNHDDDGLDHDGDGQWPFHTFVEQLIIDMFDPVWEIRHGSVMALREILTHQGASAGVLKHDLRLGGNFMVELEDKSITIEKKEDSSMSNILKREREIDLNMQVSADEFDSNLKRPKLENVTSSTSMDSLITCSNEGDTKISISSETSGYNLPLDCVNGQFNCNSVEMDVVSFSDGLQDACKEPTIVAEQKGYSEEIPSRNLNVLRNVPQNSELMSMVKVARSSWLRNSGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQELLPDLLGLVLPACKSGLEDPDDDVRAVAADALIPASAAIVALQGPTLRTIVMLLWDILLDLDDLSPSTSSVMNLLSEIYSQEEMVPMMYEVLRLGDNGISIQNGVGGGGDDDDDEEENPYVLSTLAPRLWPFMRHSISSVRYSAMRTLERLLEAGYKRRMSELSNASFWPSIIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVKCSVEDLDTAARSYMASWIELASTPFGSALDASKMFWPAAFPRKSQFRAAAKMRAVKSEYDYGGDFGLDSTKGSVPQERNGDAAMDSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEDSLKYVVDPLWRSLTSLSGVQRQVASMVLISWFKEIKRTNSSKNLDGIPGALKDWLLDLLGCSDPALPTKDSLLPYAELSRTYSKMRNEAGQLLNAIKSSGMFDELLSTTKIELDSLSVDGAISFASKVPAVCNDSSLNESLIKNTLDDIESTKQRLLTTSGYLKCVQSNLHVTVSSAVAAAVVWMSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPQAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSELALRLLCEKFGALLFDKLPKLWDCLTEVLKPSSSESPAVTNEKQATMAVESISDPQILINNIQVVRSIAPLLNEELKPKLLTLLPCIFKCIQHSHVAVRLAASRCITSMARSMTVKVMSAVVENAIPMLEDASSVHARQGAGMLINFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGISRNADDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQSSAIVASDIAEHRTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISCLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSHVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSLSTILSGVLPGVSDIISELHNLHHSPKLVALQEILEECGIGVDASGSEGSVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSKKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLNQFLAKLNG* 2063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0980 2062 Pfam Helicase conserved C-terminal domain 1842 1944 IPR001650 -
Ahy3g0980 2062 CDD SF2_C_SNF 1813 1955 - -
Ahy3g0980 2062 Gene3D - 1439 1697 IPR038718 -
Ahy3g0980 2062 Gene3D - 4 94 IPR011989 -
Ahy3g0980 2062 Gene3D - 1219 1423 IPR011989 -
Ahy3g0980 2062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1699 2000 IPR027417 -
Ahy3g0980 2062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1451 1698 IPR027417 -
Ahy3g0980 2062 CDD DEXHc_Mot1 1466 1698 IPR044078 GO:0005524
Ahy3g0980 2062 Gene3D - 515 692 IPR011989 -
Ahy3g0980 2062 SMART helicmild6 1858 1944 IPR001650 -
Ahy3g0980 2062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1478 1648 IPR014001 -
Ahy3g0980 2062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1834 1990 IPR001650 -
Ahy3g0980 2062 Pfam Domain of unknown function (DUF3535) 795 1249 IPR022707 -
Ahy3g0980 2062 Gene3D - 1708 2020 IPR027417 -
Ahy3g0980 2062 MobiDBLite consensus disorder prediction 251 267 - -
Ahy3g0980 2062 SMART ultradead3 1462 1659 IPR014001 -
Ahy3g0980 2062 MobiDBLite consensus disorder prediction 245 267 - -
Ahy3g0980 2062 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1994 IPR044972 GO:0003677|GO:0016887|GO:0017025
Ahy3g0980 2062 Pfam SNF2-related domain 1484 1780 IPR000330 GO:0005524|GO:0140658
Ahy3g0980 2062 SUPERFAMILY ARM repeat 6 1506 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0980 Ahy-Chr3 11502512 11520270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0980 1461 1999 RAD5 or RAD16-like Gene Family AT1G02670 26.316 5.18e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy3g0980 DUF3535 4.00E-102 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0980 K15192 - gmx:100777977 3421.33