LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g0978	ATGGCTAACTCCTCCTTCTGCCTCCTCCTCTTCATTCTCTTCTGCTTCCTCTCTTCTGTTACTATCATAAATACACTTTCAACTGTTTCCATCTCCGAGACTTCCAACCAAACATTTATTTGTGCCTTACAGAATCCCAACCGACAAGTACAAGGACAATCTAACCTTAACTGTACAAGCTTTCCACCTGGAATCTCTCTTCAACTGAATCGTAACCTCTCATATGCTGAAATTGCTGGTGGCAGTGGATTCCTATGTGCATTGAGGACACCATCTTCTTCTAACTCCATCATGGGTTGTTGGAGATTCTCTGCCAATGCTACCAATGTTCCTTTCAAGCGTGTCTACCATGGACCTGTAATTCAAAACATGGATGCCGGAAACTCCCATGTTTGTGGCCTTGTAACTCAGAACAATAATAGCCTTAAGTGCTGGCAATGGCCTCGCTTCGATTCAAGCAAGGTCACCAACTTGTCAAGTATTGCTGTGGGAGAGAATTTTGTCTGCGGCTTATCGGAGTCATCAGGCAAGGTTACTTGCAGTGGTGGTGATACCGGAGTTGTTGGTAAGGAGCCTGGTGGCGCGCACTCTGCCATTGCAGCCGGGTTTAGGCATGCTTGTGCCATCTCCATCGATGGAAGCTTGGATTGCTGGGGTGACGTGGATCAGAAACCGCAGGGTAAGTTTGTTGATTTGGCCTTGGGAGAGAACCGAAGTTGTGCACTTAGAGATAATAGAACTGTTGCTTGTTGGGGACAGAATAATTTCAGGATTCCAAAGAGATTTGAAGGGACTTTCTTTGTGGCAATTGTGGCAAAACGAAGTGTTTTCTGTGGAATTGTGTATTCTAATTTTAGCTTGGTATGTTGGGGTGCTAAGTTTTTTGATACAAATGCTGAGGTGTTTGAAAATGTCCTCCCTGGACCTTGTAGGAGTAACTGCCCATGCGGAATCTTACTAGGCTCTGCCACACTATGCTCTTCAGGAATGTCAATTTGTACATCTTGTTCCCCAAGAAATAAGACTGGTTCGCCCTCGCCATCGCCACCACCCACAAGTAGTCCGACCGGGACTACAAAAAGTAGTGGATGGAGCAAGAAGATGGTTGCATTCTTGGTGGTTGGATGTGTTGGTTGCAGTTCCCTGCTGCTAGTGTTTTGTTTCTTCATTTACTGGCACTGCAAGGGTAAAGGAGGCCGCGTCCACGACTCTGGGCGATTGGATGAATCAGGGACTGGGAGCGCCTCGCCAAGCCACCCGGAAGGTGGAGGCGGCCGTGGAGTTCTAGAGAAGCGTTTAAGCCACGTGATCAGCTTGGGAAACGGGAGCCATTTGGAGGAATACAGCCTTCAAGTGCTTCTTGAAGCGACCAACAATTTCTCAGAGGACAAGAAAATAGGGACAGGTAGCTTTGGGTCTGTATACCATGCCACACTGCAAGAAGGCAAGGAAGTCGCCATAAAAAGAGCCGAAAACTCTCCCCATTCGCCCTCCAATGCCACCAGAAGGCAGGAAGACAAGGACAGTGCATTTGTGAACGAGCTAGAGAGCCTCTCTAGGCTCCACCACAAGAATCTGGTGAGGCTATTGGGGTTCTATGAGGACGCCAACGAGCGCATATTGGTTTACGAGTACATGAACAATGGAAGCTTAAACGAGCATCTCCACAAGCTTCATACTTCAACATTAATGTCTTGGGCCGTGCGCATCAAAGTAGCACTTGATGCAGCAAGAGGCATAGAGTACCTTCACCAATACGCAACCCCACCAATCATTCACCGCGACATAAAATCATCAAACATACTGTTAGACTCAAAGTGGACTGCCAAAGTTTCTGATTTTGGACTCTCACTCATGGGTCCTGAAGACGAAGAGTCGCATCTTTCGCTCCTTGCGGCCGGCACAGTTGGTTACATGGACCCTGAATACTACAGGCTTCAAATGCTAACTACAAAGAGCGATGTCTACAGTTTCGGAGTAGTGCTCCTGGAAATTCTGTCTGGCCACAAGGCCATACATAAAAATGAGAATGGAGTCCCAAGAAACGTGGTGGATTTCATGGTGCCATATATTAATCAAGATGAGCTTCACAGGGTGCTGGACCCAAGAGTGCCGCCGCCAACGCCCTACGAGATAGAGGCGGTGGCGTACGTTGGTTATTTGGCAGCAGATTGTGTGAGGCTGGAGGGCAGAGATCGTCCAACAATGACTGAAGTTGCAAATTACTTGGAAAAAGCATTGGCTGTGTGTTTGGCGAAACCATCCATGTCAAGATCCACAACCAACACTTCTGATGAATGA	2301	0.475	MANSSFCLLLFILFCFLSSVTIINTLSTVSISETSNQTFICALQNPNRQVQGQSNLNCTSFPPGISLQLNRNLSYAEIAGGSGFLCALRTPSSSNSIMGCWRFSANATNVPFKRVYHGPVIQNMDAGNSHVCGLVTQNNNSLKCWQWPRFDSSKVTNLSSIAVGENFVCGLSESSGKVTCSGGDTGVVGKEPGGAHSAIAAGFRHACAISIDGSLDCWGDVDQKPQGKFVDLALGENRSCALRDNRTVACWGQNNFRIPKRFEGTFFVAIVAKRSVFCGIVYSNFSLVCWGAKFFDTNAEVFENVLPGPCRSNCPCGILLGSATLCSSGMSICTSCSPRNKTGSPSPSPPPTSSPTGTTKSSGWSKKMVAFLVVGCVGCSSLLLVFCFFIYWHCKGKGGRVHDSGRLDESGTGSASPSHPEGGGGRGVLEKRLSHVISLGNGSHLEEYSLQVLLEATNNFSEDKKIGTGSFGSVYHATLQEGKEVAIKRAENSPHSPSNATRRQEDKDSAFVNELESLSRLHHKNLVRLLGFYEDANERILVYEYMNNGSLNEHLHKLHTSTLMSWAVRIKVALDAARGIEYLHQYATPPIIHRDIKSSNILLDSKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQMLTTKSDVYSFGVVLLEILSGHKAIHKNENGVPRNVVDFMVPYINQDELHRVLDPRVPPPTPYEIEAVAYVGYLAADCVRLEGRDRPTMTEVANYLEKALAVCLAKPSMSRSTTNTSDE*	767

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g0978	766	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4	7	755	IPR044815	GO:0004674
	Ahy3g0978	766	Pfam	Protein kinase domain	460	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g0978	766	Gene3D	Phosphorylase Kinase; domain 1	429	545	-	-
	Ahy3g0978	766	SUPERFAMILY	Protein kinase-like (PK-like)	440	744	IPR011009	-
	Ahy3g0978	766	SMART	serkin_6	460	743	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g0978	766	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	591	603	IPR008271	GO:0004672\|GO:0006468
	Ahy3g0978	766	ProSiteProfiles	Protein kinase domain profile.	460	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g0978	766	Gene3D	-	27	188	IPR009091	-
	Ahy3g0978	766	Gene3D	-	191	360	IPR009091	-
	Ahy3g0978	766	Pfam	Regulator of chromosome condensation (RCC1) repeat	198	220	-	-
	Ahy3g0978	766	Pfam	Regulator of chromosome condensation (RCC1) repeat	230	256	-	-
	Ahy3g0978	766	Gene3D	Transferase(Phosphotransferase) domain 1	546	757	-	-
	Ahy3g0978	766	ProSitePatterns	Protein kinases ATP-binding region signature.	466	488	IPR017441	GO:0005524
	Ahy3g0978	766	CDD	STKc_IRAK	466	745	-	-
	Ahy3g0978	766	MobiDBLite	consensus disorder prediction	339	362	-	-
	Ahy3g0978	766	PANTHER	OJ000114_01.11 PROTEIN	7	755	-	-
	Ahy3g0978	766	MobiDBLite	consensus disorder prediction	403	427	-	-
	Ahy3g0978	766	MobiDBLite	consensus disorder prediction	488	508	-	-
	Ahy3g0978	766	SUPERFAMILY	RCC1/BLIP-II	112	295	IPR009091	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g0978	Ahy-Chr3	11490744	11493598	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g0978	25	761	Receptor kinase-like Gene Family	AT5G47850	51.969	0.0	715

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Ahy3g0978		Pkinase	7.60E-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g0978	-		-	pvu:PHAVU_011G003100g	998.423