Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0943 ATGGCTCGTGGAAGAATTCAGTTGAAGAGAATAGAGAACCCGGTTCACAGGCAAGTCACCTTCTGCAAGCGCCGAGCTGGGCTTCTCAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGACGCTGAAATTGGCCTTGTCATTTTCTCCGCACATGGCAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGAGTGATAGAGAGGTACATGAAGTTTACTGGGGCGGCTCAGCCTGAAGAACCACCAACTGAACCGCATCATCATCCTCTTGATGCTAAAGAGGAAGCGGATGTTCTAAAACAGGAAATTGACACATTGCAAAAGGGAATCAGTTATTTGTTTGGAGGAGGAACTGGGACAATGACAATCGATGATTTACAAATCTTAGAGAAGAATCTCGAGACTTGGTATGAAATGAGTAGTAATCCCCAGTTTGCATATATATTCACTTCAGATGAACCTCATGTTACAAGAAATTCAAGATTTGAGAGACAAGGAGGGTACACTCAAAGCAGCAAACAAGTTTCTCCATGA 537 0.4432 MARGRIQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGVIERYMKFTGAAQPEEPPTEPHHHPLDAKEEADVLKQEIDTLQKGISYLFGGGTGTMTIDDLQILEKNLETWYEMSSNPQFAYIFTSDEPHVTRNSRFERQGGYTQSSKQVSP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0943 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Ahy3g0943 178 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy3g0943 178 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Ahy3g0943 178 Pfam K-box region 87 138 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy3g0943 178 MobiDBLite consensus disorder prediction 159 178 - -
Ahy3g0943 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 138 - -
Ahy3g0943 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 138 - -
Ahy3g0943 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy3g0943 178 MobiDBLite consensus disorder prediction 163 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0943 Ahy-Chr3 10886393 10891225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0943 1 123 MADS-box Gene Family AT1G71692 70.312 2.48e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy3g0943 K-box 1.10E-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0943 - - ahf:112789464 355.14