Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0928 ATGGAGAAAAATAACAACATAACCTGCAAAATCTGCAATAAGTGTTTCTCCACCGGAAAAGCCATAGGGGGCCACATGAGATCTCACTTGGTCAAATTGCCAATACCTCCCAAGCCTGACCCAGAGAATCAAGCACTTGACAACTCTAACAAGTTAACCAACCATGCAATTCAAGCTCCTTCCTCAATGAATTTCCATCCCGAAAAGAAACCAGCACAAAATCTTCAATCTCCGAAACACAGCTTCTTAGCCTTTTTTTCAAAAGTAAACATAGAAAATAGATTTCTGCCATACCCTAAAAACCCAACCCGTAAAAGATCCAAATGTGGCCGACAAATTATTAAAGCAGTTGAGAAAAGATCTGAACCAAAACAAGAGAGTTCAACATCTGAAACCCCTCGTGCAAAAGAAGCAGCTAGGTCCTTGATATTGCTTTCCAAAGATAATTGGCCAGCAAGCAAAGAGATCAAGACGCAAGAGATGGAGGGAGCCAACCAAATGTTTACAAAAGATAATGAAAATGGCAAAGATGCCTTACTTGTTCAGACTCCCACTCAAGTTAAGTTCAGGTGTTTAGATAAAAAAACAGTCGAATGCCCATCGTGCTCCAAGATGTTCAAATCTAAACAAGCACTCGGCGGGCACAAAAAGGTACACTTAAACAACCCTAAGGTTGCTAATGCTCACAATAAATTTGTGGACAAGTCGCTAGACCTTAATTTTCCAGCTTTTAGAGATGATGAAGATGTTGACCAAATCAATTTTCCAACCATGGGCAATGGAAAATAA 789 0.3992 MEKNNNITCKICNKCFSTGKAIGGHMRSHLVKLPIPPKPDPENQALDNSNKLTNHAIQAPSSMNFHPEKKPAQNLQSPKHSFLAFFSKVNIENRFLPYPKNPTRKRSKCGRQIIKAVEKRSEPKQESSTSETPRAKEAARSLILLSKDNWPASKEIKTQEMEGANQMFTKDNENGKDALLVQTPTQVKFRCLDKKTVECPSCSKMFKSKQALGGHKKVHLNNPKVANAHNKFVDKSLDLNFPAFRDDEDVDQINFPTMGNGK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0928 262 MobiDBLite consensus disorder prediction 116 133 - -
Ahy3g0928 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Ahy3g0928 262 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 193 248 - -
Ahy3g0928 262 SUPERFAMILY beta-beta-alpha zinc fingers 8 219 IPR036236 -
Ahy3g0928 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Ahy3g0928 262 MobiDBLite consensus disorder prediction 116 137 - -
Ahy3g0928 262 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 191 IPR044303 GO:0006355
Ahy3g0928 262 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 193 248 IPR044303 GO:0006355
Ahy3g0928 262 SMART c2h2final6 197 219 IPR013087 -
Ahy3g0928 262 SMART c2h2final6 7 29 IPR013087 -
Ahy3g0928 262 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Ahy3g0928 262 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Ahy3g0928 262 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 191 - -
Ahy3g0928 262 Pfam C2H2-type zinc finger 198 219 - -
Ahy3g0928 262 Pfam C2H2-type zinc finger 9 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0928 Ahy-Chr3 10641594 10644400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0928 9 253 C2H2 Transcription Factor Family AT3G60580 24.837 1.30e-15 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g0928 zf-C2H2_6 1.70E-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0928 - - adu:107495627 528.094