Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0927 ATGGAAGAAGGGATGGGAGAATCCATGACTAGGGTTTGCCCTCCTAATCTTCGGTATGAGCAGCAACCGCAGCACACTGCGGGTACCATCAAGAAGATTCGACTGGAGAACTTTATGTGCCATGAAAACTTCGAGATGGAGTTCGGAAACGCCGTCAATTTCGTCCTTGGTCAAAACGGAAGTGGTAAGAGTGCCATCCTAACAGCATTGTGTGTTGCATTTGGTAGTCGAGCTAAAAAGACCGATAGGGCAAACCATTTGAAGGATCTCATTAAAAAGGGTTGCAGCAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAAGATGCGTTTAAGCCTGAAATATATGGTGACGTTATCATTGTTGAACGTAGGATATCCGTATCTGCAAACTCCATTATATTAAAAGATCACCAAGGAAAGAGAGTGGGCTACCGGATAGCGGATCTCCGGGAAATGGTTGAGCATTTTAATATTGATGTGGATAATCCGTGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAACGATAAAGATAAATTTAAGTTTTTTTACAAGGCCACACTCCTACAGCAAGTCAATGATCTCTTGGAAAACATTTCTAAAGAAATAGGTGTCGCACATGGCATAGTTAAAGACTTAGAGGGTTCAATAAAGCCCGTTGAGAAGGAGCTTAAGGAGCTGCAAGACAAAATCAAAGCTATGGAACATATTGAACAAATGTCTGTAGACATTCAAAAGTTAAAGAAGAAACTTGCATGGTCTTGGGTTTATGATGTGGATAAGAATCTTCAGGCACAAAGTGCCAAGATAGATAAGCTAAAGAGCCGGATACCTGCCTGCCAAGCTAAGATTGATCAACAATTGAATGATATTGTAAGATTGAAGGAAGGCATCTCTGAGAAGAAAGACGCAATTGCAATTATGATGGAAGAGTATACACAACTTAATCAAATTATTACTGATCAAAATCAGCCTTTGTCCTTGGCTAGAAAAGAAGCGCTTGAACTTGAGCATGACTGCAATTCCAAAACTAGCAAAGTACAGAAGATGTTACAGCGACTTAAAAAACTTGAACAAGAAGTCCAGGATCTTCATGAGCAGCATGTGAAAAATACTCAGGCTGAAAAATCTGACTTGGAGGAGAAACTTAAGGGTCTCCAACATGAGGTTCATACTGCTGAGCTAGACTGGGGAAGGTTAAAGGAGGAAGAGACTAAGTTAATGAACAACATAAATTTGCAAAATGAAGAAATTAAGACAATTGTTTATAAGATCCGAGGTCATGAAAACAATTGTAATGAAATCTCCAAGCAAATCCGCGAATATGAACAGAAACAAGGCAATAAGAATTTACTTGATGCTAAAAAATGGGCTGCTACTGTTGAACATGCCATCGGGGGATTGCTCAATTCCTTTATAGTAACTGATCATAAGGATTTTCTTCTTCTGAAACAATTGGCGAAGGAAGCAAACTATAGGAATCTTCAAATTATTATTTATGATTTTTCAATACCGAGGTTAAAAATACCACAGCACATGCTTCCTGAGACAAATCATCCATCAACACTTTCCCTTTTACAATCTGAGAACCACACTGTGATTAATGTCTTAGTGGATCTAGGAAATGTTGAGAGACAAGTACTCGTAAAGGATTATGATACTGGCAAAGTGGTTGCTTTTAATCAAAGGCCTCGGAATCTGAAAGAGATCTACACAGCAGATGGCAAGAAAATGTTTTATCGAGGTGGTGTGGAGACTACTCTTCCACTAAAGGGGAAGGGACCCGGCCGTTTATGTAGTTCTTTTGAAGATTATATTAAGGATCTTCGAAGTAAGGCATCTGATGAACAAAATGCAGCTAATGAGGGTAAAAGTAGAAAACGACAGGCAGAGATCAAACTTCGGGAATTAGAATCAAATCTTACATCTGTAAAGAGGCATTGTGAAAATGTTGGACGAAGTTTATCTTCTAAGAAGCTAGCTTTGGAGGAGGCAATGCATCAGCATGCTGCTGAAAATAGCTCAATTCCTTCCTCATCTGTTGAGGAGCTTGATGTAGAAATCACAGAATTCAAGAAGAAATTAGAAGAAGAACAAATATTGTTGGAGGCCCTTCGACAAAGGAAGGATGAAGCATCGGGCAAAGCAAAGGATCTTAAAGTAAAATTTGACAAGCTGCGTGGGTCAGCAGAGGACAAATTTACTGTGATTGAAAAGGCTGGGAATCAATGTAGGAAAATTGAAAGTGAACTGGAGTTGGCTGAACAGGGGAAGGCTCACTATGAAAATCTCATGGAAAACAAGGTCCTACCTGCTATTAAGAAGGCCGAGGAAGAATATCAGGAGCTTACAAAAATGCGTGAGGAATATGCTAAGAAGGCTTCCATAATTTGCCCTGAGAATGAAATCAATGATTGTGATTCATTAGAAGGTTGTGATATGAAAACCCCAGATCAAATCAGTGCTGAATTAAAAGAACTAAGTCAGAAAGTTGAGCATGAGTGCCGAAGGCACTCTGAACCAATTGCTGATCTTAGGATGCTTTATGAGAAAAAACAACGCAAGATTATGAAGAGGCAGAAAGTGTACAAAGCTCTTCGACAAAAGTTGGATGCATGCCAGAGAGCCTTAGAGATACGGGGGAAGAAGTTTAAGAGCAATGCAACTCGCCTGAAGCAGCAGCTTTCTTGGAAGTTTAATGATCATCTGAGGAAGAAAGGAATCAGCGGACTTATTAAAGTTAATTATGAGGAGAATACCTTATCTATCGAGGTTCAAATGCCTCAAGATGCATCTAACAGAGCTGTTCGAGACACCAGGGGGCTTTCAGGTGGGGAGCGTTCTTTTTCAACTTTGTGCTTTGCATTAGCTCTCCATGAAATGTCAGAATCCCCCTTCAGAGCAATGGATGAATTCGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGAGACACTGGTTGATTTTTGTGTGGCACAAGGATCCCAATGGCTATTCATCACCCCCCATGATACCAGCACGGTGAAGCCAGGACCTAAGGTAAAGAAGATGCAAATGCTAGCCCCTCGCTCTTGA 3102 0.402 MEEGMGESMTRVCPPNLRYEQQPQHTAGTIKKIRLENFMCHENFEMEFGNAVNFVLGQNGSGKSAILTALCVAFGSRAKKTDRANHLKDLIKKGCSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISVSANSIILKDHQGKRVGYRIADLREMVEHFNIDVDNPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVNDLLENISKEIGVAHGIVKDLEGSIKPVEKELKELQDKIKAMEHIEQMSVDIQKLKKKLAWSWVYDVDKNLQAQSAKIDKLKSRIPACQAKIDQQLNDIVRLKEGISEKKDAIAIMMEEYTQLNQIITDQNQPLSLARKEALELEHDCNSKTSKVQKMLQRLKKLEQEVQDLHEQHVKNTQAEKSDLEEKLKGLQHEVHTAELDWGRLKEEETKLMNNINLQNEEIKTIVYKIRGHENNCNEISKQIREYEQKQGNKNLLDAKKWAATVEHAIGGLLNSFIVTDHKDFLLLKQLAKEANYRNLQIIIYDFSIPRLKIPQHMLPETNHPSTLSLLQSENHTVINVLVDLGNVERQVLVKDYDTGKVVAFNQRPRNLKEIYTADGKKMFYRGGVETTLPLKGKGPGRLCSSFEDYIKDLRSKASDEQNAANEGKSRKRQAEIKLRELESNLTSVKRHCENVGRSLSSKKLALEEAMHQHAAENSSIPSSSVEELDVEITEFKKKLEEEQILLEALRQRKDEASGKAKDLKVKFDKLRGSAEDKFTVIEKAGNQCRKIESELELAEQGKAHYENLMENKVLPAIKKAEEEYQELTKMREEYAKKASIICPENEINDCDSLEGCDMKTPDQISAELKELSQKVEHECRRHSEPIADLRMLYEKKQRKIMKRQKVYKALRQKLDACQRALEIRGKKFKSNATRLKQQLSWKFNDHLRKKGISGLIKVNYEENTLSIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMSESPFRAMDEFDVFMDAVSRKISLETLVDFCVAQGSQWLFITPHDTSTVKPGPKVKKMQMLAPRS* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0927 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 1016 IPR027417 -
Ahy3g0927 1033 Gene3D - 193 341 - -
Ahy3g0927 1033 Coils Coil 627 654 - -
Ahy3g0927 1033 Gene3D - 29 180 IPR027417 -
Ahy3g0927 1033 Coils Coil 217 244 - -
Ahy3g0927 1033 Coils Coil 744 771 - -
Ahy3g0927 1033 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 458 1033 - -
Ahy3g0927 1033 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 26 456 - -
Ahy3g0927 1033 Coils Coil 780 800 - -
Ahy3g0927 1033 Coils Coil 347 403 - -
Ahy3g0927 1033 CDD ABC_SMC6_euk 30 184 - -
Ahy3g0927 1033 Pfam RecF/RecN/SMC N terminal domain 30 1010 IPR003395 -
Ahy3g0927 1033 Coils Coil 432 452 - -
Ahy3g0927 1033 Gene3D - 780 1028 IPR027417 -
Ahy3g0927 1033 SUPERFAMILY Tropomyosin 263 452 - -
Ahy3g0927 1033 Coils Coil 688 729 - -
Ahy3g0927 1033 CDD ABC_SMC6_euk 911 1033 - -
Ahy3g0927 1033 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 458 1033 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Ahy3g0927 1033 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 26 456 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0927 Ahy-Chr3 10598005 10616090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0927 27 1033 Structural Maintenance of Chromosomes family AT5G61460 53.647 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0927 K22804 - gmx:100816916 1266.14