Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0909 ATGGTTGCGGACAGTGATGAATCCGAAGTATTGAAAAATGCTATTACACTAACCAAGCGACTATCTTTGGAGTCGGAAGATTCAAATGTGCAAGGAGATATCTCAACTTGCAAGAAGATCAAACTTGAGAATTTGGATGCACATGGAGGAAAAATACACGCCTCAGTTAAGAAGGCTTTTGTGTCTCGATTCGTGAATTTGCTAGAGGAAGGAATATCTTACCAAATAAGATATTTTGGTGTTGGACTCAATAAGGGTTACTTCAAGACTACACATCATGAATACGTGGTTAATTTAAACCAACGTACTGATGTGCACAGACTTCCAGAATCGTCGAGTATCCCACGATATGGATTTAAGTTTGTGAGTTTTGACACTCTCAATGCTCTTGGGTATGATTGCACCTATTTAGTTGATGTTGTTGGATATCTTGCTGGAATTGGGAATGAGAAGACTCTTGAAAAGGATGGCAAATCTACCAAATATACTGTTATCGAATTAGAGATTGATGATGGAAAAATAATGGAGTGTGCACTTTTTGGCAACTATGCACATGAATTAAATGCTTTTCTGGGATCTGGCAATAAGGATGGAGCTGTTGTCGTCTTACAGTTTGTTAGAGTGAAGTTATTTAACGAAAAAATTGTTTTACAAAATTCCATGTATGGCACAAAGATGTTCTTCAATCTTGAAGATACAACTGTCATCCAATTTAAAAATAGCTTTGTAAGATTTGAAGAATCTAGAGGTAACATCGGCGGAATTCCAAATGAGGCTGCATTCTTAAAAATTTATCAAGGCAAAACCATCGAGCAGTTAAAAGAATTCGAAACGACTGGTGGTACGGCCAATGTGAATGCAACAGGTCCACATATGCTTTTACAAAAACTTTCAAATGTTCAAGTTGTGGCCGTCTCCTTTTATCCATAA 930 0.371 MVADSDESEVLKNAITLTKRLSLESEDSNVQGDISTCKKIKLENLDAHGGKIHASVKKAFVSRFVNLLEEGISYQIRYFGVGLNKGYFKTTHHEYVVNLNQRTDVHRLPESSSIPRYGFKFVSFDTLNALGYDCTYLVDVVGYLAGIGNEKTLEKDGKSTKYTVIELEIDDGKIMECALFGNYAHELNAFLGSGNKDGAVVVLQFVRVKLFNEKIVLQNSMYGTKMFFNLEDTTVIQFKNSFVRFEESRGNIGGIPNEAAFLKIYQGKTIEQLKEFETTGGTANVNATGPHMLLQKLSNVQVVAVSFYP* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0909 309 CDD RPA1_DBD_A_like 45 105 - -
Ahy3g0909 309 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 92 280 - -
Ahy3g0909 309 PANTHER REPLICATION FACTOR A 1, RFA1 92 280 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g0909 309 Gene3D - 11 110 IPR012340 -
Ahy3g0909 309 Pfam Domain of unknown function DUF223 46 125 IPR003871 -
Ahy3g0909 309 CDD RPA1_DBD_B_like 139 242 - -
Ahy3g0909 309 Gene3D - 113 248 IPR012340 -
Ahy3g0909 309 SUPERFAMILY Nucleic acid-binding proteins 37 113 IPR012340 -
Ahy3g0909 309 SUPERFAMILY Nucleic acid-binding proteins 119 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0909 Ahy-Chr3 10374742 10383567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0909 45 275 Core DNA Replication Machinery Family AT4G19130 23.830 1.69e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0909 - - ahf:112722049 515.383