Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0842 ATGGGTGTCTGTGTTGAAAGTGATTCGGTTGTCATGGGTTCAACTTGGCTAGGTAACGATAGTGAGGAAGAAGGAGAGGTTGTTGGAGAAAATAAAGAACTAGGTGGAGTTGGGTCAATGGTTATAGGTTCAGCACATGGATATCCCTGGTTCAAAGGGATAAGTAGCGAGCCAAGGGGCATGCTCCTCAAAATTCTTGTGCGCAATTGTGCTAAGTACATTGAATGTGGCAACATCTCAGATGCAGATTCAGCATTAGCAAAAATTTCTCACCTTGCTTCCTCAGAAGGTGATCGATTCCAAAGGCTAGCAACTTATTTCAGTGAGGCACTTACATGCCAACTTGTGAATAGATCATACCTCCATGGTGCACATAACATTCTATCAAAACCACTCTCAACTTTTGAAGACTCTTTTGCTAAGGGCTTATTCTTTGAACTCTATCCATTCCAAAGGGTATCTTATGCGGTTATAAATCAGGCCATTATTGAAGCCATGACAGGGCTTCAAGGTATTCATATACTTGATCTTAGTGCACCCCATGATGCTACTCAATGGGTCCTCTTTATACAGAGTTTGAAAGAGCGTTGTAGTTCTTTTTCTTCATCATCAACTAGACCACAACAACGACCATATTTGAAGATCACTTGTGTGCATACAAATCAGGAGGTGTTAGCCCAAATGAAGTTGCGGTTGACATTGGAGGCTGACAAGTTTTTCCAATTCGAATTCAGTGACATTGTGAGTACTTTAGAAAATTTAAACCTAGATAATTTGCCTATACTTAACGGAGAGCCTATTGCAATCAGTATTGTTCTTCAATTGCACCGCCTTTTAAGCACCGATGATCCACCTGTTCCAGTTGTAGTATCCAACCAATTCTTCCATCAACAAAGTTTTGCAGATGTGATTGCCAAGGACAGTTATAATAATAACAATCACAATGTCATAATTAATCAAAGTCCTAATTCGGCATTGGCACTAGCAACTCATCATCGTTTAACTCAAAGTCCAGTGCCTAAGATGGAGTGTTTTCTGCACGGCCTCTGGAAGCTCCAGCCCAAAGTTATGGTCATCATGGAACAAGAATCAAACGTCAACGGACAATCCTTAACGGATCGGGTTGACAAAGCCTTGGATTTCTACGATGCGTTTTTTAAATGCTTGGTAACGGCGCCGTCAGTGAAGAAGATCTTCTTTGAGAGAGCGATGTTGGGAGAGCAAATAAAGAATATAATTGCGTGTGAGGGAGCTGAGAGAAAAGAAAGGTATGAGTCGCTTAAGGCGTGGATCTCAAGGCTTGAACTTGCTGGGTTTTGCGCTGAAGCTATTAGCTTGGAGGGGATGTTAAGAGGAGTAACTGAATTGCAGAATTTTGCACATGGCTATAAGATTATTAGAGATGAAAAGTTTTTGTTTCTGTGTTGGAATAATAATCCACTCTTTTCTTTATCAGCCTGGAGATACTTGTGA 1473 0.4094 MGVCVESDSVVMGSTWLGNDSEEEGEVVGENKELGGVGSMVIGSAHGYPWFKGISSEPRGMLLKILVRNCAKYIECGNISDADSALAKISHLASSEGDRFQRLATYFSEALTCQLVNRSYLHGAHNILSKPLSTFEDSFAKGLFFELYPFQRVSYAVINQAIIEAMTGLQGIHILDLSAPHDATQWVLFIQSLKERCSSFSSSSTRPQQRPYLKITCVHTNQEVLAQMKLRLTLEADKFFQFEFSDIVSTLENLNLDNLPILNGEPIAISIVLQLHRLLSTDDPPVPVVVSNQFFHQQSFADVIAKDSYNNNNHNVIINQSPNSALALATHHRLTQSPVPKMECFLHGLWKLQPKVMVIMEQESNVNGQSLTDRVDKALDFYDAFFKCLVTAPSVKKIFFERAMLGEQIKNIIACEGAERKERYESLKAWISRLELAGFCAEAISLEGMLRGVTELQNFAHGYKIIRDEKFLFLCWNNNPLFSLSAWRYL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0842 490 PANTHER SCARECROW-LIKE PROTEIN 3 45 488 - -
Ahy3g0842 490 Pfam GRAS domain family 66 488 IPR005202 -
Ahy3g0842 490 ProSiteProfiles GRAS family profile. 54 488 IPR005202 -
Ahy3g0842 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 488 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0842 Ahy-Chr3 9487362 9496641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0842 41 488 GRAS Transcription Factor Family AT1G50420 36.383 3.80e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ahy3g0842 GRAS 1.80E-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0842 - - ahf:112772597 932.169