Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0636 ATGGCCTCCGATTCTTCTCCCATCAACAACGGTCCTTCATCCCCCGACGATTCCCCTTCAAGCCCAATCGGCAACACCTTCTCCTCCCCCGGTGATGCTGCTCGCCGCAATCGTCGCCGTGGCCGCTCTTCCACGCCGTCCGCCTTCGATACTCCGCCAGTGCATCGTTCTCGATTTGCCGCCGCTGCTGATGCCACTCCTACTCCGTCTCGTTCCCGGCAGAGATCCGGAGGCGCCGGCCGTCCTCCGGTTACTCCGACCTCCACCGATGACATTCCGGCGTCTTCTGAAGGCGGTGATGGCTTCGACATGGATGACGCCAGGCCTACCTTCGTTTGGGGCACGAACATCAGCGTTGAGGACGTTAACGACGCGATTCAGAGATTCCTGAGGGACTTTCGAGAAGCTTCTTCGTCACAGAATGATGATGACATGTTGCAGCACTTGCATACCGAAGGGAAGTACGAGAAGCTCATCAAACAGGTGATTGAAGTGGAGGGAGATTCCCTTGATGTTGATGCGCATGATGTGTTCGAACATGACCCTGATTTGTACACCAAGATGGTTAGGTACCCTCTCGAGGTTCTTGCGATCTTTGACTTGGTTCTTATGAATATGGTTAGCAGGATTAAGCCTATGTTCGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAATCCTCCACTACAATGAGGAATTTGAATCCTACTGATATTGAGAGGATGGTGTCAATAAAGGGTATGATTATACGGTGTAGCTCAATCATACCGGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGGAACTGCACCGACCCTGTTGCTGTAGAGAGAGGACGTATAACCGAGCCAACTATATGCTTGAGAGAAGAGTGTCAATCCAGGAACTCCATGACACTGCTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGATGAGATACCTGAAGGTGGAACTCCTCACACGGTGAGCTTGCTAATGCATGACAAGCTGGTAGATGCTGGAAAGCCTGGAGATAGAGTTGAGGTGACTGGTATATATAGAGCTATGAGTGTCAGAATTGGAGCAACTCAGCGAACTGTGAAATCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCAAGGATGCTGGTAGACGATGCTATGGACATTGACAATAGCGAGGGCAGAAATCCAGAAGAGGTTCACTTTGATGAAGAAAGGGTGGGTCAACTGAAAGAGCTCTCAAAACAGCCAGATATATATGAAAGATTGACAAAGTCATTGGCACCAAATATCTGGGAACTAGACGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATCAATATTCTTCTTGTTGGTGATCCTGGTACTAGCAAGTCTCAGCTTCTTCAATACATTCACAAACTATCTCCTCGTGGCATTTACACTAGTGGAAGGGGGAGTTCTGCAGTTGGATTGACTGCTTACGTGACCAAGGACCCTGAAACAGGGGAAACTGTTCTTGAAAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATTTGCTGTATAGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAGCAAACTGTTTCTATAGCGAAGGCTGGTATTATTGCTTCTCTCAATGCTAGGACTTCCGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTGCCTCCCACTCTTTTGTCCAGGTTCGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACTGACCGGCGACTTGCCAAACATATTGTTTCCTTACACTTCGAGAATCCCGAGAGCATGGAGCAAGATGTGATGGACATATCTACCTTGACTGATTATGTGAGCTATGCCCGAAAGCACATACACCCCCAGCTGTCTGATGAAGTTGCCGAAGAATTGACTAGAGGTTATGTGGATATAAGAAGAAGAGGAAACTTTCCTGGAAGTAGCAAAAAGGTGATAACAGCAACGCCAAGACAGCTTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCCCGGATTCGCTTCGCAGAATGGGTTGAAAGGCGTGATGTAATGGAGGCATTTCGGCTTCTTGAAGTTGCAATGCAGCAATCTGCAACGGATCACGCTACTGGAACTATCGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGAATGAGACGAGAAGCTATGGTACAAGCAACCCGCAACATAATCATGGAGAAGATACAAATTGGGGGACCATCCATGCGATTATTGGAGCTATTGGAAGAGTTAAAACAGAGCACTGGCAGTGAAGTTCAACTTACTGATCTAAAGAATGCAGTTGCTACTCTCGCCAGTGAAGGATTCGTTACCATGCATGGTGAAAGCGTTAAAAGATCATGA 2520 0.4659 MASDSSPINNGPSSPDDSPSSPIGNTFSSPGDAARRNRRRGRSSTPSAFDTPPVHRSRFAAAADATPTPSRSRQRSGGAGRPPVTPTSTDDIPASSEGGDGFDMDDARPTFVWGTNISVEDVNDAIQRFLRDFREASSSQNDDDMLQHLHTEGKYEKLIKQVIEVEGDSLDVDAHDVFEHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRIKPMFEKHIQTRIFNLKSSTTMRNLNPTDIERMVSIKGMIIRCSSIIPEIREAIFRCLVCGNCTDPVAVERGRITEPTICLREECQSRNSMTLLHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRIGATQRTVKSLFKTYIDCLHIKKTDKSRMLVDDAMDIDNSEGRNPEEVHFDEERVGQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESMEQDVMDISTLTDYVSYARKHIHPQLSDEVAEELTRGYVDIRRRGNFPGSSKKVITATPRQLESLIRLSEALARIRFAEWVERRDVMEAFRLLEVAMQQSATDHATGTIDMDLITTGVSASERMRREAMVQATRNIIMEKIQIGGPSMRLLELLEELKQSTGSEVQLTDLKNAVATLASEGFVTMHGESVKRS* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0636 839 ProSitePatterns MCM family signature. 539 547 IPR018525 GO:0003677|GO:0005524|GO:0006260
Ahy3g0636 839 Gene3D - 258 310 - -
Ahy3g0636 839 MobiDBLite consensus disorder prediction 1 107 - -
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 559 572 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 471 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 531 545 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 583 595 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 610 618 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 SMART AAA_5 472 622 IPR003593 -
Ahy3g0636 839 Pfam MCM OB domain 231 360 IPR033762 -
Ahy3g0636 839 ProSiteProfiles MCM family domain profile. 430 636 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 SMART mcm 227 744 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 79 838 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 Pfam MCM N-terminal domain 125 227 IPR027925 -
Ahy3g0636 839 Gene3D - 749 834 IPR036388 -
Ahy3g0636 839 Pfam MCM P-loop domain 419 640 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 757 IPR027417 -
Ahy3g0636 839 CDD MCM4 433 742 - -
Ahy3g0636 839 Gene3D - 408 748 IPR027417 -
Ahy3g0636 839 MobiDBLite consensus disorder prediction 1 32 - -
Ahy3g0636 839 Pfam MCM AAA-lid domain 656 742 IPR041562 -
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 744 753 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 304 316 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 592 609 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 253 266 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 446 457 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Ahy3g0636 839 Gene3D - 231 370 IPR012340 -
Ahy3g0636 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 79 838 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ahy3g0636 839 Gene3D - 116 225 - -
Ahy3g0636 839 SUPERFAMILY Nucleic acid-binding proteins 149 381 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0636 Ahy-Chr3 6734761 6740186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0636 1 838 Core DNA Replication Machinery Family AT2G16440 72.600 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0636 K02212 - gmx:100782586 1413.67