Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0553 ATGAGTAGGGTTTGCGGTAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTTGTTCATCAATCTTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGTGAGTCCGTTGAGTTCGCCATAGAGTCCGATCCTGATGGACGCACCAAGGCCGTTGATGTCACTGGACCTGATGGCTCTAACGTTCAGGGGAGTCGCCGTGGTGGAGGCGGTGGCGGAGGTGGTGGAAGGAGTTACGGCGGTGGACGAGGCGGAGGCGGAGGATATGGTGGTGGATATGGTGGTGGAGGAGGCTATGGCGGCGGTGGTCGCGGTGGAGGCCGTGGCGGCGGTGGATATGGTGGTGGTGGATACGGAGGAGGTGGCGGTGGCGGCGGCGCTTGCTACAGCTGCGGTGGGATGGGTCACATGGCCAGGGATTGCACCCAGGGAGGAGGCGGAGGAGGAGGCAGGTACGGTGGAGGCGGCGGCGGTGGTGGCGGAAGCTGCTACAACTGTGGGGATTCTGGTCATTTTGCAAGGGACTGCCCAACAGGCTCTCGCTGA 585 0.6154 MSRVCGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGESVEFAIESDPDGRTKAVDVTGPDGSNVQGSRRGGGGGGGGGRSYGGGRGGGGGYGGGYGGGGGYGGGGRGGGRGGGGYGGGGYGGGGGGGGACYSCGGMGHMARDCTQGGGGGGGRYGGGGGGGGGSCYNCGDSGHFARDCPTGSR* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0553 194 Gene3D - 1 81 IPR012340 -
Ahy3g0553 194 ProSiteProfiles Zinc finger CCHC-type profile. 176 190 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 PANTHER COLD SHOCK PROTEIN 1 3 191 - -
Ahy3g0553 194 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Ahy3g0553 194 SUPERFAMILY Nucleic acid-binding proteins 3 69 IPR012340 -
Ahy3g0553 194 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 SMART c2hcfinal6 140 156 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 Pfam Zinc knuckle 175 190 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 CDD CSP_CDS 6 69 IPR002059 GO:0003676
Ahy3g0553 194 Pfam 'Cold-shock' DNA-binding domain 6 69 IPR002059 GO:0003676
Ahy3g0553 194 ProSiteProfiles Cold-shock (CSD) domain profile. 3 69 IPR002059 GO:0003676
Ahy3g0553 194 ProSiteProfiles Zinc finger CCHC-type profile. 141 156 IPR001878 GO:0003676|GO:0008270
Ahy3g0553 194 SMART csp_8 5 70 IPR011129 GO:0003676
Ahy3g0553 194 Gene3D - 171 194 - -
Ahy3g0553 194 Gene3D - 136 164 - -
Ahy3g0553 194 SUPERFAMILY Retrovirus zinc finger-like domains 133 192 IPR036875 GO:0003676|GO:0008270
Ahy3g0553 194 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 191 - -
Ahy3g0553 194 PRINTS Cold shock protein signature 42 60 IPR002059 GO:0003676
Ahy3g0553 194 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Ahy3g0553 194 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Ahy3g0553 194 MobiDBLite consensus disorder prediction 56 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0553 Ahy-Chr3 5778175 5779283 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy3g0553 CSD 1.10E-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0553 - - pvy:116130730 160.229