Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0552 ATGGCGACGTTGATCTTATATATTTTCTTTAGCATTGTTGGGTCACTGTTAAAAACACTGATTGATGAGAGAAGCAGAGTCCCAGAAGCATCAACAACAGAAACAGAAACAGAAGAGAGGAGGCAGATAAGAGATACTATTGTGATGGATCATATTGTAAGATTAATGGCTCATCAGAGAGAACATCAAACAAGGCTGCAATTCAATGGTGATTCTGCTGTTATAACTATGGGTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGATAAAAGCAGTGGATGCTCCCCACTTGAATGCTCTATTTGCATGGAAGTGTTCAAGGATGGGGAGTTGATTCAACCTCTTGGATTGTGTCCTCATCAGTTTCATTCTTCTTGTCTTTACTCTTGGCTTCATAGTGGAAAATCTACTTGCCCCCTTTGCCGTGTGGATTTAGCAACCACATAG 465 0.4108 MATLILYIFFSIVGSLLKTLIDERSRVPEASTTETETEERRQIRDTIVMDHIVRLMAHQREHQTRLQFNGDSAVITMGRKALRVLPPVKSFVVEDKSSGCSPLECSICMEVFKDGELIQPLGLCPHQFHSSCLYSWLHSGKSTCPLCRVDLATT* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0552 154 Pfam Ring finger domain 104 148 IPR001841 -
Ahy3g0552 154 SMART ring_2 105 147 IPR001841 -
Ahy3g0552 154 ProSiteProfiles Zinc finger RING-type profile. 105 148 IPR001841 -
Ahy3g0552 154 SUPERFAMILY RING/U-box 104 152 - -
Ahy3g0552 154 PANTHER OS06G0666500 PROTEIN 59 151 - -
Ahy3g0552 154 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 59 151 - -
Ahy3g0552 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0552 Ahy-Chr3 5776029 5776493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0552 65 148 C3H Transcription Factor Family AT2G17450 40.659 1.70e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0552 - K10664 aip:107632256 292.352