Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0545 ATGGCGCACAAATTGTCACTATACCTAGGATCCCGACCTGTCCAACAGAGAAGACGGAAGCTCGGTCCTCAACGAGCTCAAGTGGTCGAAGAGCAAATACAAGCCCTCCTAGAAGCCGGCTTTATCAAAGAGGTCAAATACCCGGCTTGGCTAGCAAATGTGGTGCTAGTCAAGAAGCCGAACGAATACGCAGGAGATCAAGAGGAGGCCTCCACAACTTGGAAATTGTATGTGGATGGTTTTTCCAACAAAATCGGAAGCGGTGCAGGCATAATACTAGTCAACCAAGAGAAAACCCAAATAGAGGTCTCCCTGAAGTTTGAATTCCCAGCCTCCAACAACCAAGCAGAATATGAAGCCTTGATTGCCGGGTTGAAGTTAGCCGAAGAAGTCGGTGCAACTAAAGTAGTGGTCTTCAGCGACTCTCAAGTAGTGACTTCTCAAATCTATGGAGAGTATCAGGCTAAAGACCCAAATATAAAAAGGTCACATTCTGCTGAAATTGAAAAAATTGTCAAAACAGTGACCAAGATATTGAGTCCCAGACCATCATCGAGTCTATCTAATGATATAGTAGTTGGGATGGAGTTCTCTCTACAAGAACTAGGGAAGCTTCTAGTTTTGGACTCAGATGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGTATAGGAAAAACAACTCTTGCTTGCAGATTATATGAAAAAATCTCTCATCAATATGATGTTTCATGCTTTATGGATGATGTAAGTAAAACATATAGAGATTGTGGTTCACTTGGTATGAAAAAGCAGCTTCTTTGTCCAGCTTTCATGGAAGAAGATTCTCCAATATGCAATATTTTAATGGCAGATAATTTGATTCAAAATATGTTACACTATAGAAAGGTTCTCATAGTTTTGGATAATGTTGATCAGAGAATTCAGTTGGAGAAGTTGGCTTTAAAACGGGAATGGTTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAGCATATATTGAGAGAGTATGGAGCGGACCACGTTTACAAAGTTCAACTCTTAAATGATGAGAATGCTCTCCAATTGTTTTGCAGAAAATCTTTCAAATGTAATCATGTTGCAAAAGATTATGAAAGCCTGACAGATTCTGCATTAGCATATGCTAATGGACTTCCTTTAGCAATTAAAGTATTGGGCTCATTTTTGTTTGGGCGAGATGTCTCTGAATGGAGTAGTGCATTGGTTAGACTGAAAGAAACTCCAACAAAAGATATTATGGATGTACTTCGAATCAGTTTTGATGGACTTGAGGATGACGAAAAAGACATATTTCTTGATATTGCCTGTTTTTTCCCCAATGACATTGAAAAGTATGTAAAAGATATTTTACGTATTCGAGGATTCCATCCTGATAATGGTATAAAAGTTCTCATTGAAAAATCCCTCATAACCCGTGATCGGTGGAAGATCACTATGCACGATTTGTTGAGAGACTTGGGAAGAAGTATTGTTCGGGAAAAATCACCCAAAAAACCGAGAAAGTGGAGCAGGTTATGGAATCACAAGGATCTAAGCAATGTCTTGCGAGAAAACAAGGTAAAAATAGTTATTTAA 1605 0.3907 MAHKLSLYLGSRPVQQRRRKLGPQRAQVVEEQIQALLEAGFIKEVKYPAWLANVVLVKKPNEYAGDQEEASTTWKLYVDGFSNKIGSGAGIILVNQEKTQIEVSLKFEFPASNNQAEYEALIAGLKLAEEVGATKVVVFSDSQVVTSQIYGEYQAKDPNIKRSHSAEIEKIVKTVTKILSPRPSSSLSNDIVVGMEFSLQELGKLLVLDSDDDVRVVGICGMGGIGKTTLACRLYEKISHQYDVSCFMDDVSKTYRDCGSLGMKKQLLCPAFMEEDSPICNILMADNLIQNMLHYRKVLIVLDNVDQRIQLEKLALKREWLGRGSRIIIVSRDEHILREYGADHVYKVQLLNDENALQLFCRKSFKCNHVAKDYESLTDSALAYANGLPLAIKVLGSFLFGRDVSEWSSALVRLKETPTKDIMDVLRISFDGLEDDEKDIFLDIACFFPNDIEKYVKDILRIRGFHPDNGIKVLIEKSLITRDRWKITMHDLLRDLGRSIVREKSPKKPRKWSRLWNHKDLSNVLRENKVKIVI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0545 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 444 IPR027417 -
Ahy3g0545 534 CDD RNase_HI_like 74 162 - -
Ahy3g0545 534 SUPERFAMILY "Winged helix" DNA-binding domain 421 525 IPR036390 -
Ahy3g0545 534 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 2 62 - -
Ahy3g0545 534 Gene3D - 350 434 IPR042197 -
Ahy3g0545 534 SUPERFAMILY DNA/RNA polymerases 2 79 IPR043502 -
Ahy3g0545 534 PRINTS Disease resistance protein signature 216 231 - -
Ahy3g0545 534 PRINTS Disease resistance protein signature 292 306 - -
Ahy3g0545 534 PRINTS Disease resistance protein signature 385 399 - -
Ahy3g0545 534 SUPERFAMILY Ribonuclease H-like 73 163 IPR012337 -
Ahy3g0545 534 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 188 528 - -
Ahy3g0545 534 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 188 528 IPR044974 GO:0006952
Ahy3g0545 534 Gene3D - 78 180 IPR036397 GO:0003676
Ahy3g0545 534 Pfam NB-ARC domain 206 420 IPR002182 GO:0043531
Ahy3g0545 534 Gene3D - 181 348 IPR027417 -
Ahy3g0545 534 Pfam Reverse transcriptase-like 82 173 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0545 Ahy-Chr3 5695825 5702331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0545 213 516 WRKY Transcription Factor Family AT5G45050 37.049 5.63e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0545 - - ahf:112772043 1047.34