Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0540 ATGGATTGCATGAGAATCCAGAGCACCTTGTCTCATAGGAAGAACTGGAAATATGATGTGTTTGTGAGTTTCAGAGGCGAAACTCGCAACAACTTCACCGATCATCTTTATGCTGCTCTCCGCAGACACGGCATAGTTGCCTTCAGGGATGATACTAAGCTCAAGAAAGGAGGACTTATATCAGAAGAGCTTCTGGAAGCTATTGAAGCATCACAGGTTCTGATTGTGGTCTTCTCAATGAATTATGCTTCCTCCACATGGTGCTTGCAAGAACTAGCAAAGATAGCTGATTGCATTCAAGTCCCGGGACACCGTGTTCTGCCTGTTTTCTGTGATGTGAGTCCATCTGAGGTCAGAAAGCAAAGTGGAAACTATGAAGAAGCCTTTGTGGAACATGAAGAAAGATTCAAAGGTGATACAGAGATGATGGAGCAAGTGCAAAGATGGAGGGGAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATTTGAAGGATAAGTCACAATCCGCTGAGATTGAAAAAATTGTCAAAGCGGTAACCAACAGATTGAGTCTCAAACCATCATCAAGTGTATCTAATGATATAGTTGGAATTCACTCCCCTGTGCAAGAACTAGAAAAGCTTCTAGTTTTGGACTCAGAGGATGATGTTCGAGTTGTAGGAATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTTGCCAAGATTTTATATGAAAAGATCTTTCACCAATATGATGTTTCATGTTTTGTAGATGATGTGAGCAAAACTTACAAACATGATGGACCACTTGGTGTGCAAAAGCAACTTCTTTGTCAAGCTTTTATGGAAGAAAGTTTTTCGATGTGGAATCTTTCATTGGCAAATAATCTGATTCAAACTGGGTTACGCCATAGAAAGGTTCTCATAGTTCTGGATAATGTTGATAAGGAGATTCAGTTGGAGAAGTTGGCTTTAGAACGGGAATGGCTCGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAGCATATATTGAGAGAGTATGAAGTGGATCATGTTTATAAAGTTAAACTCTTAAATGATGAGAATGCTCACCAATTGTTTTGCAGAAAAGCTTTCAAATGTAATCATGTTGTAAAAGATTATGAAAGCCTGACAGATTCTGCATTAGCATATGCTAATGGACTTCCTTTAGCAATTAAAGTATTGGGCTCATTTTTGTTTGGGCGAGATGTCTCTGAATGGAGTAGTGCATTGGTTAGACTGAAAGAAACTCCAACAAAAGATATTATGGATGTACTTCGAATCAGTTTTGATGGACTTGAGGATCCGGAAAAAGAAATATTTCTTGATATTGCCTGTTTCTTTCCCGATGATGAAGAAGATTATGTAAAAGATATTTTGCGTATTCGAAGATTTCATCCTGAGATTGGTATAAGAATTCTCATTGACAAATCACTCATAACTTGCAGTCGGTATTACATTGTTATGCATGATTTGTTGAGAGAGTTGGGTAGAAGTATTATTCGAGAAAAATCACCCAATGAACCAAGAAAGTGGAGCAGGTTATGGAACTATAGGGATCTAAGTGATGTCTTGTGGGAAAACAAGGTAAAAAATGTTTGA 1614 0.3872 MDCMRIQSTLSHRKNWKYDVFVSFRGETRNNFTDHLYAALRRHGIVAFRDDTKLKKGGLISEELLEAIEASQVLIVVFSMNYASSTWCLQELAKIADCIQVPGHRVLPVFCDVSPSEVRKQSGNYEEAFVEHEERFKGDTEMMEQVQRWRGALTQVANLSGWDLKDKSQSAEIEKIVKAVTNRLSLKPSSSVSNDIVGIHSPVQELEKLLVLDSEDDVRVVGICGMGGIGKSTLAKILYEKIFHQYDVSCFVDDVSKTYKHDGPLGVQKQLLCQAFMEESFSMWNLSLANNLIQTGLRHRKVLIVLDNVDKEIQLEKLALEREWLGRGSRIIIVSRDEHILREYEVDHVYKVKLLNDENAHQLFCRKAFKCNHVVKDYESLTDSALAYANGLPLAIKVLGSFLFGRDVSEWSSALVRLKETPTKDIMDVLRISFDGLEDPEKEIFLDIACFFPDDEEDYVKDILRIRRFHPEIGIRILIDKSLITCSRYYIVMHDLLRELGRSIIREKSPNEPRKWSRLWNYRDLSDVLWENKVKNV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0540 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Ahy3g0540 537 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Ahy3g0540 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 533 IPR044974 GO:0006952
Ahy3g0540 537 Gene3D - 354 438 IPR042197 -
Ahy3g0540 537 Gene3D - 2 157 IPR035897 -
Ahy3g0540 537 Pfam NB-ARC domain 203 424 IPR002182 GO:0043531
Ahy3g0540 537 SUPERFAMILY "Winged helix" DNA-binding domain 425 529 IPR036390 -
Ahy3g0540 537 SMART till_3 17 159 IPR000157 GO:0007165
Ahy3g0540 537 Gene3D - 174 349 IPR027417 -
Ahy3g0540 537 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Ahy3g0540 537 PRINTS Disease resistance protein signature 389 403 - -
Ahy3g0540 537 PRINTS Disease resistance protein signature 220 235 - -
Ahy3g0540 537 PRINTS Disease resistance protein signature 296 310 - -
Ahy3g0540 537 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 533 - -
Ahy3g0540 537 Pfam TIR domain 17 197 IPR000157 GO:0007165
Ahy3g0540 537 CDD ABC_ATPase 219 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0540 Ahy-Chr3 5670359 5672148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0540 197 520 WRKY Transcription Factor Family AT5G45050 36.000 1.51e-56 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0540 - - aip:107628789 844.728