Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0539 ATGTTTCAGGCAGTGAAGAACCTTGAAGCCATAGTTCTGCCAAGATCTCTCAAAAATAGGGAAGAGTTGTCAAAAAAGGCAACATTGAAGGTTGAAGCTTTATCACAAATGAACCACCTTAAATTACTCATACTCAAAAAAGTGAATTTCTCAGGATGTCTTGATTTTCTTTCTAATCAGTTGAGATATCTTGATTGGGAAAAATACCCTTTCACATGTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTAAATTAATCCTATATCATAGCAATATCAAAGAACTCTGGGAGGGAACAAAGGATCTACATAACTTGACACACATAGAACTATGTCATTCCAAAAATCTCGTAAAGATACCAAATTTATCTCAAGCCCCAAATCTTGAGCATTTAGATATTAAAGGATGTATTAAACTTGTTCACCTTGATGCATCCGTTGGTTCTCTAGAAAAGCTTAGTTTCTTGAATCTGGAAAACTGCAAAAGTCTTGTTAGTATTCCCAATAGCATATTTCATCTTAATTCTCTTCAACATTTAAATCTGTCTGGCTGTTCAAAATTATTTAGATATCAGTTGTTAGAGAAACCAAGACAAAGCGAACAGTTGAATACAGATCAAAGTGTGCAAAGCCACATGACATCCTCCATATGCAAAACTCTTACAAGACCTCTCCATTTTTTCTATTCTAAAAGGCTTTCCAGTTCAGTTGATTTGTTGGTGCCTTCATTGTCACGTTTTCCAGCTTTGACATATCTTGACATAAGTTTCTGTAATCTAGTTCAAATACCTGAAGCTATTGGACAGTTACATTGTTTAGAAAGCTTAAACATAGGGGGAAACAATATTGTTACGCTACCTCATTGCATCAAAGAACTTCCCAAGCTAGGGGAGCTGAATTTGGAGTACTGTAACAATCTAAAGTGGCTGTCAAGTACCCTTTTGCCGATAGGAGGAGCTAGCCGTCAAAGTTGTTACTATGGAGGATTATATGTTTTCAACTGCCCCAATTTAAGTGACATGGAAGGTTGTTGTCTCACAGTAGTTTCATGGATGATAAAAGTGATTGAGGTGAACATGCAATGTTCTTTACTCAAATGCATCATTCAAGTTGTTATTCCAGGGAATAAAATTCCAAGGTGGTTCAACAAACAGAATACGGGTAATTCAGTGAGCCTGGATCCTTTTCCCATTGTGGATGACAATAATTGGATTGGCATTGCTTGTTGTGTAACATTTGTTGTACATCATGCTCCAATTCAATTGCTTAAACGTAGGAGTAGAGTGCTTGTAGGTTGTGGTTTTCGCTCTAAACCTCTGCATGAGAGCATTTATCCCGTTGTTCCAATACGTCTTGAGAAAGATTCGATCACAACTAAATTAGATCATATGCTGATAGTATTTTTCTCCCGGGAAGTTTTCATTAATCTTTTTGTAAGTTATTTAAAAAAAGGAGCATCTGATGTTGATAGCATTGAATTGGCAATCATGAGTGATTATCCAGAAGAAGTAGAACTGAAGAGTTGTGGTTACCGGTGGCTATATAAGGAAGATGTGGAACAATTTAACCCAACAATGATGTATACCGCCACTTCTTCAACTCAGCAGCACAAGTTCTTGGCAATTGAACATGTCCAATAA 1641 0.3662 MFQAVKNLEAIVLPRSLKNREELSKKATLKVEALSQMNHLKLLILKKVNFSGCLDFLSNQLRYLDWEKYPFTCLPSSFQPNKLVKLILYHSNIKELWEGTKDLHNLTHIELCHSKNLVKIPNLSQAPNLEHLDIKGCIKLVHLDASVGSLEKLSFLNLENCKSLVSIPNSIFHLNSLQHLNLSGCSKLFRYQLLEKPRQSEQLNTDQSVQSHMTSSICKTLTRPLHFFYSKRLSSSVDLLVPSLSRFPALTYLDISFCNLVQIPEAIGQLHCLESLNIGGNNIVTLPHCIKELPKLGELNLEYCNNLKWLSSTLLPIGGASRQSCYYGGLYVFNCPNLSDMEGCCLTVVSWMIKVIEVNMQCSLLKCIIQVVIPGNKIPRWFNKQNTGNSVSLDPFPIVDDNNWIGIACCVTFVVHHAPIQLLKRRSRVLVGCGFRSKPLHESIYPVVPIRLEKDSITTKLDHMLIVFFSREVFINLFVSYLKKGASDVDSIELAIMSDYPEEVELKSCGYRWLYKEDVEQFNPTMMYTATSSTQQHKFLAIEHVQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0539 546 Pfam C-JID domain 373 520 IPR045344 -
Ahy3g0539 546 SUPERFAMILY L domain-like 31 311 - -
Ahy3g0539 546 Gene3D Ribonuclease Inhibitor 12 215 IPR032675 -
Ahy3g0539 546 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 527 IPR044974 GO:0006952
Ahy3g0539 546 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Ahy3g0539 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 527 - -
Ahy3g0539 546 Pfam Leucine Rich Repeat 82 101 IPR011713 -
Ahy3g0539 546 Gene3D Ribonuclease Inhibitor 227 354 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0539 Ahy-Chr3 5668276 5670367 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0539 48 299 WRKY Transcription Factor Family AT4G12020 37.548 8.17e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0539 - - ahf:112789053 1107.82