Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy3g0510 | ATGAGCACTCGGTCAGGCAGGGGGGCTATAAAAAGTTACAGACGGAGGAAGACAGGTTTGGAAATTGACCTTAATCAGGAGCCTGGTGGTGAGAATCGTGAGCTGGAAGGACCTTCAACTCAGGTGGAACCCCAACAAGTTCAAGCTTCCCAGCAACAGCAGGCTGTACAGATGCCACAGCCAGCACAGCCTGCAACAATTGATGTGGAGGCCATTGTTGATGATGATGTTGTTGAATCTAGCCCAAGGGCTTTTGCTGAGGCTAAAAACAATGCCAGAAACAATGCGAGAAGAAATCGTGAGAGGACTATAGTTGATGTGGATTTAGAAGATCAGAATAGGATAACCAACTATTGCCGCAACAAACGCAGAAGAGAGTCCTCAAGTCGAACAGTTATTAATTGTGATCTTTACATTAACTTGGAAAGCAGTAGCAGTTCTATGAGGGAACCTGTTCAAAAGGCCCCTGAACCTCCAAAGGAGCCGGTCTTCAACTGTCCAATATGCATGGGTCCCCTGGTTGAAGAGATGTCAACAAGGTGTGGTCATATATTCTGTAAGAGTTGCATCAAAGCTGCAATAAGTGCTCAGAGTAAATGCCCTACATGTAGAAAAAGGGTTACTGTGAAGGAGCTTATAAGGGTTTTTCTGCCATCGACTAGCTGA | 666 | 0.455 | MSTRSGRGAIKSYRRRKTGLEIDLNQEPGGENRELEGPSTQVEPQQVQASQQQQAVQMPQPAQPATIDVEAIVDDDVVESSPRAFAEAKNNARNNARRNRERTIVDVDLEDQNRITNYCRNKRRRESSSRTVINCDLYINLESSSSSMREPVQKAPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKSCIKAAISAQSKCPTCRKRVTVKELIRVFLPSTS* | 222 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0510 | 221 | SMART | ring_2 | 166 | 203 | IPR001841 | - | |
| Ahy3g0510 | 221 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
| Ahy3g0510 | 221 | ProSitePatterns | Zinc finger RING-type signature. | 181 | 190 | IPR017907 | - | |
| Ahy3g0510 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 219 | IPR013083 | - | |
| Ahy3g0510 | 221 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Ahy3g0510 | 221 | PANTHER | ELFLESS, ISOFORM B | 2 | 221 | - | - | |
| Ahy3g0510 | 221 | MobiDBLite | consensus disorder prediction | 38 | 61 | - | - | |
| Ahy3g0510 | 221 | SUPERFAMILY | RING/U-box | 161 | 216 | - | - | |
| Ahy3g0510 | 221 | Pfam | Zinc finger, C3HC4 type (RING finger) | 165 | 203 | - | - | |
| Ahy3g0510 | 221 | ProSiteProfiles | Zinc finger RING-type profile. | 166 | 204 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy3g0510 | Ahy-Chr3 | 5363632 | 5367569 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0510 | 14 | 220 | C3H Transcription Factor Family | AT5G48655 | 50.481 | 1.58e-47 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy3g0510 | K22651 | - | gmx:100792853 | 253.062 |