Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0467 ATGTTGCATTGTGTAAACATGACAGTGTTGGAGAGGCAGCAAGCAAGAAGCAAGAAATGCATTCAACAAGATCTTCAAGAAAATGGATCCTCGTTATTTGACGTCTTCTCTGATGATTATTCCTCCCTAATTCACATGCCTCCTGCTCCTTCTTCTTCTTCCGCCATTTCCTCATTCGTCTCTCCCAAGAAGAGAAAATCTGAAAGCCACAAGGTGGTTGTTGCTCAACAAAGTCATAACAAGAAGGACAAAAGAGTCAAAGTGAGTGCGGAAGAAGACTCATCCAAAATGAGTGAGCAAATTACCAACAAGGACGAAGTAGCTTCTGCTGAGAATTCCATTAAAGGATCTACTTCGGAGCCTCACAATAACAAACCTGACTACATTCATGTCCGAGCTCGCCGCGGCCAAGCCACTGATAGTCACAGCCTTGCTGAAAGAGTTAGAAGGGAAAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGATGCAACAAGATTACAGGAAAAGCTGGAATGCTTGATGAAATCATAAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCTATGAAATTAGCTGCTGTAAACCCAAGACTTGAACTCAACGTTGATGATCTCTTTGCCAAAGAGGTATTTCCTGCTTGTGCTCCAAATTTTGAAAGCATTGGAATGGGATCATCAGAGATGACTAATAACCCTGCTGCATATCTTGACTTCAATTCAGTTCAACAACTTGTATCATGTTCCAATGGATTAATCAACAACATTGGCATGAATATGACCCCTTCACCAGACATGGGTCTTAGGAAAACCATTGCTGCACCCCTCTCTGTGTCTTTACCAGAAACATTTCTTGACTCATCATCTTGTTTCAATCAAGTTTTACCTCCTTCAATTTGGGAAGGCGAATTCCAAATCCAAAACCTTTACAATGTGGCTTTTGATCAACCTAGAACATCATCTTTTCCACCTTCTCACCCATTTACAGGTTTAGTGGAAGCTAGTAATCTAAAGATGGAGATGGATATGTAG 1050 0.4095 MLHCVNMTVLERQQARSKKCIQQDLQENGSSLFDVFSDDYSSLIHMPPAPSSSSAISSFVSPKKRKSESHKVVVAQQSHNKKDKRVKVSAEEDSSKMSEQITNKDEVASAENSIKGSTSEPHNNKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLELNVDDLFAKEVFPACAPNFESIGMGSSEMTNNPAAYLDFNSVQQLVSCSNGLINNIGMNMTPSPDMGLRKTIAAPLSVSLPETFLDSSSCFNQVLPPSIWEGEFQIQNLYNVAFDQPRTSSFPPSHPFTGLVEASNLKMEMDM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0467 349 Gene3D - 134 210 IPR036638 GO:0046983
Ahy3g0467 349 MobiDBLite consensus disorder prediction 101 124 - -
Ahy3g0467 349 SMART finulus 143 193 IPR011598 GO:0046983
Ahy3g0467 349 MobiDBLite consensus disorder prediction 63 100 - -
Ahy3g0467 349 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Ahy3g0467 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 327 IPR024097 GO:0006355
Ahy3g0467 349 CDD bHLH_AtBPE_like 127 212 - -
Ahy3g0467 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Ahy3g0467 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 204 IPR036638 GO:0046983
Ahy3g0467 349 MobiDBLite consensus disorder prediction 48 126 - -
Ahy3g0467 349 MobiDBLite consensus disorder prediction 48 62 - -
Ahy3g0467 349 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 61 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0467 Ahy-Chr3 4871009 4874020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0467 49 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.333 1.02e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g0467 HLH 1.80E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0467 - - gsj:114373950 358.221