Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0464 ATGGCTGCCGCAGATGTTGAGTTCCGGTGCTTCGTTGGTGGGCTTGCATGGGCCACCGATAACGATGCTCTAGAGAAGGCCTTCTCTGCCTACGGAGAAATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGAAGATCCAGAGGTTTTGGATTTGTGACCTTTGCTAATGAGCAATCCATGAGGGATGCGATTGATGGCATGAACGGCTCCAACCTTGACGGCCGTAACATCACTGTCAACGAGGCTCAGTCCCGTGGAGGTGGCGGAGGTGGTGGAGGTGGCTTCAGAAGCGGAGGCGGCGGTGGATATGGTGGTGGCGGATTTAGCCGCGGCGGCGGTGGTGGTGGATACGGAGGCGGGGGCCGTCGTGAAGGTGGATACAACAGAAATGGTGGTGGCGGCGGTGGCTACGGAGGTGGCGGTTATGGCGGTGGTAGGGACCGTGGCTATGGTGATGGTGGCTCCCGTTACTCCAGAGGCGGTGGTGACTCCGATGGCAGCAGCTGGAGGAACTGA 522 0.5843 MAAADVEFRCFVGGLAWATDNDALEKAFSAYGEIVESKVINDRETGRSRGFGFVTFANEQSMRDAIDGMNGSNLDGRNITVNEAQSRGGGGGGGGGFRSGGGGGYGGGGFSRGGGGGGYGGGGRREGGYNRNGGGGGGYGGGGYGGGRDRGYGDGGSRYSRGGGDSDGSSWRN* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0464 173 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 132 - -
Ahy3g0464 173 Gene3D - 2 106 IPR012677 -
Ahy3g0464 173 PANTHER GEO13361P1-RELATED 1 132 - -
Ahy3g0464 173 MobiDBLite consensus disorder prediction 122 173 - -
Ahy3g0464 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Ahy3g0464 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Ahy3g0464 173 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Ahy3g0464 173 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0464 Ahy-Chr3 4858840 4860012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0464 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 3.55e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0464 - K13195 ccaj:109800369 159.073