Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0398 ATGATGAATACTTCAGCTGAGCAATCCTCCTTCTTCAAAGTCTTCCTTCCACAGTTTAGCTCTGAAAAATTGCTACTCCCAAAAGAGCATGTGGCATTGACAAGGATGAAAGAAAGGGTACCTGAGGAATTCATGCTGAGAAATGGAAGAGGAGGAGCATGGAGGGTGAAGACAAGTTGCATTGGTGAGAAGGTGTATTTTGATGATGGATGGAAGGAGTTTGTAAGGGATAATGGTATACAAGAAGCTTGTGTTATTATTGTTTTCAATCCAGATGGAAGCAGCACATTCGAGTTCAAGATCTTTGAATCATCAATGTGTGAAAAGACACAAACCTTGGAGGAGGCGGCGGCAGTGGAGATGGAGGAGTCATCAGAAGAAGAAGAAGAAGAAAATGATGATGATGATGATGATGATGATGAAGATTATGAGGATGAGGACGAGGATGAGGATGAGATGGATCATCATAGAGCTGGGAAAGCTCCTGCAAAAAGGAAAAGGGGAAATTACAATGATATTAAGGAGTATGGAGAAATTATTGCAACTTTTATTGATCAACACAATCCATACTTTGTTTTCAAAAGGAACAAATCCAGACCCAATGAACTGCATGTTCCATGTAAGCTCATTAAGGAGTACTCCATTACCATCCCAGAAACTATTAAATTATGTTGCAAGTATATCAAAGTGAACTCGCCGGAGAAAATAACTGTTGAGAGTAGTCCTTGGCCTGCTTTCACCGGAAGAGCGACTAAATGGATAGACGGTAGAGTTTGCATTAAAGGGTGGGGAGGATTTTGCAGAAGGAACAATGTAAATGCAAGTGCTGATACTTTCATATGTGAACTGAAGATGAATATCAATGATGGCTGCAGCATCAGCAATAATGTCTACTTCTACAATGATGGGAAATGCTACTGTTTGCACCACAAGAAGGACGAAGAGAAGTGTTCACTACGTTGCAGGGTTGAATTCTTTTGGAGGATTGAAGGTGCAGAACAATGTCACCTCATTAGGCCATTCATTGTGCACTGA 1035 0.4068 MMNTSAEQSSFFKVFLPQFSSEKLLLPKEHVALTRMKERVPEEFMLRNGRGGAWRVKTSCIGEKVYFDDGWKEFVRDNGIQEACVIIVFNPDGSSTFEFKIFESSMCEKTQTLEEAAAVEMEESSEEEEEENDDDDDDDDEDYEDEDEDEDEMDHHRAGKAPAKRKRGNYNDIKEYGEIIATFIDQHNPYFVFKRNKSRPNELHVPCKLIKEYSITIPETIKLCCKYIKVNSPEKITVESSPWPAFTGRATKWIDGRVCIKGWGGFCRRNNVNASADTFICELKMNINDGCSISNNVYFYNDGKCYCLHHKKDEEKCSLRCRVEFFWRIEGAEQCHLIRPFIVH* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0398 344 PANTHER B3 DOMAIN-CONTAINING 5 286 - -
Ahy3g0398 344 SUPERFAMILY DNA-binding pseudobarrel domain 7 107 IPR015300 -
Ahy3g0398 344 Gene3D - 175 301 IPR015300 -
Ahy3g0398 344 SUPERFAMILY DNA-binding pseudobarrel domain 184 283 IPR015300 -
Ahy3g0398 344 Coils Coil 118 138 - -
Ahy3g0398 344 ProSiteProfiles B3 DNA-binding domain profile. 9 105 IPR003340 GO:0003677
Ahy3g0398 344 SMART B3_2 11 105 IPR003340 GO:0003677
Ahy3g0398 344 MobiDBLite consensus disorder prediction 119 152 - -
Ahy3g0398 344 Pfam B3 DNA binding domain 11 104 IPR003340 GO:0003677
Ahy3g0398 344 MobiDBLite consensus disorder prediction 114 164 - -
Ahy3g0398 344 CDD B3_DNA 10 102 IPR003340 GO:0003677
Ahy3g0398 344 Gene3D - 2 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0398 Ahy-Chr3 4185413 4188936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0398 11 286 B3 DNA Binding Superfamily AT3G06160 25.472 6.01e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy3g0398 B3 3.00E-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0398 - - ahf:112736814 484.952