Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0396 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCTTCCACCATTCAATCTAGGCAATTGAGGATTCCAGATACTTTTCTGAATAGATATGGAGCTGACCTTTCTTCAATTGCTACCTTCTCAGTTCCTGATGGCAGCATTTGGCGTGTCAGATTAAAGAAGTTGGACAATGGATTTTGGTTTGTTGATGGTTGGGCGGAATTCGTTCAACGCTACTCCATCGGTGTTGGATACTTGATAGTATTCCAATACGAAGGAAAGTCGACTTTCATTGTTCGTATCTTTAATTTGGCCACTTCTGAGATAAGCTATCAGTCACCCGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTCCGCTGAATATTCATCACCTTCCGGCCTTACTCCTGGTGCATTGCAAAATAAATTTACCCCTGAGAAGAATTATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCCAAACTTAATAGCGTAAACTGGGGCGATAGTGCAAACACCCTCTCTTCAAGAAGTGCCAATTCGCTAGACAGTCAGTTGACCAGAGATATAGGTGTTCAGTTTAATGCAATTGAGTTTAAAAGGTCTACTGACGAATTGAAGTTGCGTACTTCTGTTGGCGAAAAGGAGAAGAAAGCTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGAGGACCAAGAAGAGGAGGCAGAGATGCGATTTAGATTCTATGAAAGTGCATCGGCAAGAAAAAGAACTGTGACAGCAGAGGAAAGAGAAAGGGCCGTCAATGCAGCGAAGGCATTCGAACCACTTAATCCTTTCTGTCGTGTTGTCCTGCGGCCGTCCTACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTCGCGGAAAAGCATTTGAACGAGGTTTCAGGATTCATCAAACTTCAGCTCTCCGACGGGAGACAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGCAGAGCTAAGCTGAGCCAGGGGTGGTTTGAATTCGCGATAGAGAACAACCTTGGCGAGGGAGACGTCTGTGTGTTTGAGCTCCTTCCGATGAAGGAGGTGATACTTCAAGTTACACTGTTTCGCGTCACTGAGGACGATGGATTCTTCAGCCCTCCTCCTCTGCACCAGCTCCAGCCGAGCCAAAATCTCGTGAGTCAATCTAAAATGTTGAACGCTCACATGCATCAGCGCCTCGGCTCGGGTAAACTGATCAGGAACTAA 1275 0.4565 MPRPSFHKLVLPSTIQSRQLRIPDTFLNRYGADLSSIATFSVPDGSIWRVRLKKLDNGFWFVDGWAEFVQRYSIGVGYLIVFQYEGKSTFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDSAEYSSPSGLTPGALQNKFTPEKNYTPPPLQNLFNGSKLNSVNWGDSANTLSSRSANSLDSQLTRDIGVQFNAIEFKRSTDELKLRTSVGEKEKKAPRKKRKSDGQEPSEDQEEEAEMRFRFYESASARKRTVTAEERERAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFRVTEDDGFFSPPPLHQLQPSQNLVSQSKMLNAHMHQRLGSGKLIRN* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0396 424 CDD B3_DNA 284 379 IPR003340 GO:0003677
Ahy3g0396 424 Gene3D - 1 98 IPR015300 -
Ahy3g0396 424 Gene3D - 263 383 IPR015300 -
Ahy3g0396 424 MobiDBLite consensus disorder prediction 218 247 - -
Ahy3g0396 424 PANTHER B3 DOMAIN-CONTAINING 1 414 - -
Ahy3g0396 424 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Ahy3g0396 424 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Ahy3g0396 424 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Ahy3g0396 424 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Ahy3g0396 424 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Ahy3g0396 424 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 414 - -
Ahy3g0396 424 SMART B3_2 286 381 IPR003340 GO:0003677
Ahy3g0396 424 SMART B3_2 6 98 IPR003340 GO:0003677
Ahy3g0396 424 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Ahy3g0396 424 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0396 Ahy-Chr3 4170269 4173583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0396 1 385 B3 DNA Binding Superfamily AT3G18990 50.639 4.11e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy3g0396 B3 1.10E-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0396 - - adu:107476734 819.305