Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0384 ATGCTGTATTTTCATATGGATTTAAAAACTTCTTACTCAGATTGGTTATTTTCTGTGCGGTGTCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTGGTGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGACTAAAGAAGGGCGTAAACTTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATGAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGCAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTGTCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCCGCCGTTGCAATCAGGCTAAGGAGTACACATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCAATATGAATCGATGTCAAGAGCAGCAAGTTTTATTAGAGAATCTATCACGTACTATGCAGAGAATGTGTCAGACTTTGAGGAAAGTCTCGGATGCTGAATTATACGGTATCGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCTCATATGGCGCCGGATGGTAACCATGATAACCATGATTCGGTCCAACCTATGTCCATGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCTGTAATCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACCACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTTAATCGTTCGTTAAAGAAAATACGAACCGTGCTCGACTCGGTCCAAGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATATCAGTAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTTCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCATCTGGTAGCAAAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATTACAATCCCACTACTTCAAGCATGACAGACTCGTCGAATGGCTCTTGCTCAATTTTGCGCTCCAGCTCATCTGCCTCTGGGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTGATAGTGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAGATTTGATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAGCAAGATTCAAATTACAAATCGGGTCATTCCAACTCAAGTATCTCGACGATGAAGAGGAATGGGTGAGGATGGTAAATGACTCAGATTTGGAAGATTGCATAGAAATGTTGGATGATCTTGGCACCCGTGCTGTGAAATTACTTGTTCACGACATGCCTAGTGGTTTGAGCAGCCTTGGCAGTAACGGTTGA 1749 0.4242 MLYFHMDLKTSYSDWLFSVRCLSNNKRAALTEIIDVLRAVCGAHSLPLALTWIPCYYSEGIGDEASRIRTKEGRKLPGEKTVLCIEESACYMNDIVVGGFVRACVEHYLEEGQGAAGKALQSNRPFFCPDVKAYNISEYPLVHHARKYKLNAAVAIRLRSTHTNDDDYIIEFFLPVNMNRCQEQQVLLENLSRTMQRMCQTLRKVSDAELYGIEGSQVQFSKEEGSHMAPDGNHDNHDSVQPMSMTNNETEAAHNQAMEGSRKQIEKKRSPVKKNVSLSVLQQYFSCNLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIRTVLDSVQGVEGGLKFDPYKGGFISVGSSNQEINAHKSSLFRKKCSVKYPDPASGSKDSKPIAMGDGGLRQEPFPVSILESSRCDIAYHSPNSLVADEMETYLNGADKLGEHYNPTTSSMTDSSNGSCSILRSSSSASGKFENRKHLKAKSPCVDSGSKIIVKAAYGEDLIRFKFDPAAGCLQLYEEVAARFKLQIGSFQLKYLDDEEEWVRMVNDSDLEDCIEMLDDLGTRAVKLLVHDMPSGLSSLGSNG* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0384 582 Pfam PB1 domain 492 570 IPR000270 GO:0005515
Ahy3g0384 582 SUPERFAMILY CAD & PB1 domains 483 573 - -
Ahy3g0384 582 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 387 - -
Ahy3g0384 582 MobiDBLite consensus disorder prediction 222 270 - -
Ahy3g0384 582 SMART PB1_new 489 571 IPR000270 GO:0005515
Ahy3g0384 582 MobiDBLite consensus disorder prediction 237 257 - -
Ahy3g0384 582 PANTHER PROTEIN NLP8 387 581 IPR045012 GO:0003700
Ahy3g0384 582 Pfam RWP-RK domain 275 323 IPR003035 -
Ahy3g0384 582 PANTHER PROTEIN NLP8 7 387 IPR045012 GO:0003700
Ahy3g0384 582 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 387 581 - -
Ahy3g0384 582 Gene3D - 486 573 - -
Ahy3g0384 582 ProSiteProfiles RWP-RK domain profile. 255 343 IPR003035 -
Ahy3g0384 582 ProSiteProfiles PB1 domain profile. 489 571 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0384 Ahy-Chr3 4023084 4027041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0384 22 582 NLP Transcription Factor Family AT2G43500 47.720 2.27e-165 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ahy3g0384 PB1 8.20E-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0384 - - aip:107632302 963.37