Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy3g0377 | ATGCCGCGTCCGGCGAAATCAGTGAGGCCGTCGCACGAAGGAAGCGCCGCCGCCAGGGATTCCGACGAACCTTCCAACAACCTCTGGGTTGGGAATCTAGCGCCGGACGTAACCGACGCTGATCTGATGGACCTGTTCGCGCAGTACGGCGCCCTCGACAGTGTCACCTCTTACTCGGCCCGTAGCTACGCCTTCGTGTACTTCAAGCGCGTGGAGGACGCTAAGGCCGCGAAGAACGCTCTCCAAGGGTTCTCCCTCCGCGGCAATTCCTTGAAAATCGAGTTTGCTAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTGACAAAGGAAGAATTAGAAGCCGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAGTTTTTCAGGGACCGAAATACTGCATGTATTGAATTTTTCAATCTGGATGATGCCACTCAGGCAATGAAAGTCATGAATGGGAAACGTTTAGGTGGTGAACACATTCGTGTAGACTTCCTTCGATCACATTCTACAAGAAAAGATCAGTCGTCTGATTATGGACAGTTTCAAGGAAAAGGCTATGGGCCTACTGATCCCTACACTGGACAAAAAAGACCTCTGCATTCACAACCCCCAATGGGAAGGAAAAGTGATAGTCAACCCAGTAATATTTTGTGGATTGGCTATCCTCCTGCCATTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGAGAAATCGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTAGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCAAAAGAGGGTCTTCAAGGACGCCTTTTTAATGACCCTCGGATAACAATTATGTATTCAAGCAATGAGTCTGGAAAAGATTACCCTGGCTTATATGGTGGTAGCGGTCCAAGAACTGATGCGTTCATGAATGACCATCCATTTCGACCATTGCAAATGGATTCATTTGGTCATAATCGTCCAGTGGTTCCAAATAATTTTCCTGGACAGTTGCCACCTGGAGGTATTCTTGGACCAAATGCACAAATGCGGCCGTTTGGTCCTCAAGGGAGTCTTGAACCTCTTATTTCTGGTCCCGAGTTTAATGAAATGGGCATGCACCACAAATTTCAGGATGGTAGTTCCAAGGGTAACATGGGTCCAAACAGGAAAAGGCCTTCTCCTCCTGCCCCAGGGATGCTTTCTCCTTCTCCTGCATCAGGTGTCAGGCTCCCTTCAAGATCAGCTTCCGGTGGATGGGATGTACTTGACATAAACCATATTCCAAGGGAGTCTAAACGTATGAGATTAGATGGTACTATGCCTGTTGATGATGTTCCGTATCCTTTAAGGAATGTAGATGATCGTGTGTTAGGTATGGACCAAACATATGGTCTTGATCCGGTGAGCACAAGGTTGGGAGCTGGAGTACTTGGTGCTGCACAACCTGATGCTGATCATATATGGCGTGGAATCATTGCAAAGGGAGGGACTCCGGTTTGTCAAGCTAGATGTGTCCCTATTGGGAAGGGGATAGCTGCTGAGCTCCCCGAGGTGGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCTATTGGTTTTGACATTGTTTTCTTTTTGCCAGATAGCGAAGAGGATTTTGCTTCCTACACTGAATTCCTTCGCTATCTTAGTGCAAAAAACCGTGCGGGTGTTGCAAAATTTGCTGATAATACCACATTATTCTTGGTACCCCCTTCTGATTTCCTGACAAAAGTTTTGAAGGTCACTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCTCCAGTTCCAGGTAATACTCCAATGCAGCAGTCTTCACATTTGCCTATACCATCAAGTCAGTATATGCAGCAGATTCCTCCTTCACAAGCTGAGTATGGATTGATTTCTTCAAAGGAAGAACCAGTTTTGCCAACAGATTATAACAGACTGTTGCATGATGAGTCTAAACTTCCTCCTAAACCAGTCTATCCGGCCACTAGTGGTCCCCCCTCACTTCAGGCTGGGCCTCCGGATTATCCTACTGGTTCCATGTCCCAAGCTGGAGTTGGATTAACTCCGGAGCTTATTGCAGCTTTAACTAATTTAATCCCTGGAACAACTCAATCATCGACAATTGATGGTGCCAAGTCAGCAGTAGGCTCCTCGACTGTGAGGCCTCCATATCCCCCTGTTGCACCTAATGATGGTAACCAATCTCATTTATGGAAACAGGACCATCAAATTGTTGATCAGTCTGTTCATCCTCCTCAAAATTTGGGGAGTATGTATAACATTCACAATGCTCACTATCAGCCTTATCCACCACAATCTGCTCCTGGCTTCCCTAATCAAGTGGTCCCTGGCAGTTCGCATATTCAAGACACTGCTGCTGGTCTGCAGCAGCAGGGTGCTGTTTCGTCTAGACAGATGACTAATTACATGATACCTTCTCATAGTGGACAGGTAGCTGCACCCACCCATGTCAGTCAGCAGTATCAGGTTGAAGCCTCCCCTGGCAACCAGGGAGGATATGGAGTGCTTCAAGGGACAGATGCCTCTGGTTTATATAATTCTCAGGCTTTCCAACAACCAAATAATTCAGTTGCTGCATCCACTCAAGTTCAGAGTGTTAATCCATCACAGCAACATGGTGTCCTGCCATATACACTGGACCAAGTAAATGCTGACCCTAACAGTCAGCAACATCCTCTCTATGGAGTTGGTCAGGGCTCAACAGAAGTTGAGGCTGATAAGAACCAAAGGTACCAATCAACGCTACAGTTTGCTGCCAATCTTCTCTTCCAAATACAGCAGCAGCAGCAACAGCAACCCCCTGGAGGACATGGATCAGGAATTCAATAA | 2913 | 0.4634 | MPRPAKSVRPSHEGSAAARDSDEPSNNLWVGNLAPDVTDADLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPCKQLWVGGISPAVTKEELEAEFRKFGKIEDFKFFRDRNTACIEFFNLDDATQAMKVMNGKRLGGEHIRVDFLRSHSTRKDQSSDYGQFQGKGYGPTDPYTGQKRPLHSQPPMGRKSDSQPSNILWIGYPPAIQIDEQMLHNAMILFGEIERIKSFPSRNYSLVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNESGKDYPGLYGGSGPRTDAFMNDHPFRPLQMDSFGHNRPVVPNNFPGQLPPGGILGPNAQMRPFGPQGSLEPLISGPEFNEMGMHHKFQDGSSKGNMGPNRKRPSPPAPGMLSPSPASGVRLPSRSASGGWDVLDINHIPRESKRMRLDGTMPVDDVPYPLRNVDDRVLGMDQTYGLDPVSTRLGAGVLGAAQPDADHIWRGIIAKGGTPVCQARCVPIGKGIAAELPEVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLSAKNRAGVAKFADNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPGNTPMQQSSHLPIPSSQYMQQIPPSQAEYGLISSKEEPVLPTDYNRLLHDESKLPPKPVYPATSGPPSLQAGPPDYPTGSMSQAGVGLTPELIAALTNLIPGTTQSSTIDGAKSAVGSSTVRPPYPPVAPNDGNQSHLWKQDHQIVDQSVHPPQNLGSMYNIHNAHYQPYPPQSAPGFPNQVVPGSSHIQDTAAGLQQQGAVSSRQMTNYMIPSHSGQVAAPTHVSQQYQVEASPGNQGGYGVLQGTDASGLYNSQAFQQPNNSVAASTQVQSVNPSQQHGVLPYTLDQVNADPNSQQHPLYGVGQGSTEVEADKNQRYQSTLQFAANLLFQIQQQQQQQPPGGHGSGIQ* | 971 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0377 | 970 | Gene3D | - | 100 | 208 | IPR012677 | - | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 723 | 744 | - | - | |
| Ahy3g0377 | 970 | SMART | rrm1_1 | 104 | 171 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | SMART | rrm1_1 | 224 | 292 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | SMART | rrm1_1 | 27 | 94 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 2 | 968 | - | - | |
| Ahy3g0377 | 970 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 100 | IPR035979 | GO:0003676 | |
| Ahy3g0377 | 970 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 235 | 289 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 105 | 168 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 92 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 98 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | Gene3D | - | 7 | 99 | IPR012677 | - | |
| Ahy3g0377 | 970 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 297 | IPR035979 | GO:0003676 | |
| Ahy3g0377 | 970 | Pfam | SPOC domain | 490 | 607 | IPR012921 | - | |
| Ahy3g0377 | 970 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 103 | 175 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 178 | 221 | - | - | |
| Ahy3g0377 | 970 | CDD | RRM3_Spen | 105 | 174 | - | - | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 380 | 423 | - | - | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 670 | 704 | - | - | |
| Ahy3g0377 | 970 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 223 | 296 | IPR000504 | GO:0003723 | |
| Ahy3g0377 | 970 | PANTHER | FLOWERING TIME CONTROL PROTEIN FPA | 2 | 968 | - | - | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Ahy3g0377 | 970 | CDD | RRM3_Spen | 225 | 294 | - | - | |
| Ahy3g0377 | 970 | CDD | RRM3_Spen | 28 | 97 | - | - | |
| Ahy3g0377 | 970 | MobiDBLite | consensus disorder prediction | 679 | 693 | - | - | |
| Ahy3g0377 | 970 | Gene3D | - | 213 | 303 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy3g0377 | Ahy-Chr3 | 3924093 | 3933280 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0377 | 27 | 301 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 22.559 | 2.97e-09 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy3g0377 | - | - | gmx:100777570 | 1498.8 |