Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0339 ATGGAGTCAGATCTTCACCGGCACCCTCCCATGTTCCTGGACCACCACCACCACCACCACCACCACCACCATCACCAGCAGATGAACACCACCACCACCAACAATAACAACAATTCTTCGGGTCTAACGAGGTTCCGATCGGCACCAAGTTCGTATTTTTCCAGCATCATTGACAAGGAATTCTACGAAAGCATCTTCAACAAACCTTCAAGCCCAGAAACTGAGAAAATCCTCGCACGCTTCATGAATAGCCTTGCAAATGATGAACCTGAAGATGATTCATTACTTGGAGTAGCAGCTGCTACTTCTCCTACTACTAATAATAATAAAAATCTGTCACCGTCACCACAACCGCCACAACAAGTAGTTCAGCAAATCTCTCAAGTGAAGGAAGAAGAGATTAGTATTAATACCATTAATACCAATAATACCCTTCAGCCTCAGCCTTTGCCTTCTTCAATGAATAATGAATCATTGGTGCAGCAACCACAGCAGCAGATGAATAGTATGAGTAACAATAATTATGGATCTTTGAGTGGTAATAATCCTCCAACTCAGAGTTTTTATCAAAGTTCAGGAAGACCACCTTTGCCGAATCAGATGAAAACTGGTCGTGGAAATGCTTCGAATCTTATTAGGCATGGTAGGTCACCTGCTGGACTCTTTTCAAACCTGAACCTTGAAGGCTATGCTGCTTTAAGAGGCATGGGAACTATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCAAATTTTTCTCCGGTGGCAAGGTTGAAGAATCCACCAACCTTTTCATCCTCAGGACTAATGACTCCAATAGCTGAAATCAGGAGCACATCCAATACACTAAACAATCCAGAGAGTGCTGAAGCCTTTGCAGAAAGCCAGAGCAGCGATTTTATGTCGGGTTTACCCATTGGTTCTTGGGACGATTCTTCTTCTTCGATGATGTCCGACAACATTGCTGGTCGGAAAAGGTTCAGAGACGAAGATGTGAAACCATTTGCCGGGGTGAATGCGGCCGACACTCAGGTTAAGACCGAAGCAGGCCAGGCTCCTGGTACTCCATTGGCTCACCAGTTGAGTATGCCAAACACATCGTCGGAAATAGCAGCCATTGAGAAGTTTCTCCAGTGCTCGGATTCTGTCGTGTGCAAGATTCGTGCCAAGCGGGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTACAGGATCTGGTCCCTAACATGGACAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTGTTGATTACATCAAAGAACTTCAAAACCAAGTTGAGACTCTTTCGGAAAGTCAAGCCAAGTGTACCTGTGCACACAAGAAGCAGCAATAA 1398 0.4506 MESDLHRHPPMFLDHHHHHHHHHHHQQMNTTTTNNNNNSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDDSLLGVAAATSPTTNNNKNLSPSPQPPQQVVQQISQVKEEEISINTINTNNTLQPQPLPSSMNNESLVQQPQQQMNSMSNNNYGSLSGNNPPTQSFYQSSGRPPLPNQMKTGRGNASNLIRHGRSPAGLFSNLNLEGYAALRGMGTMGAAASNTSEDANFSPVARLKNPPTFSSSGLMTPIAEIRSTSNTLNNPESAEAFAESQSSDFMSGLPIGSWDDSSSSMMSDNIAGRKRFRDEDVKPFAGVNAADTQVKTEAGQAPGTPLAHQLSMPNTSSEIAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQNQVETLSESQAKCTCAHKKQQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0339 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 455 IPR036638 GO:0046983
Ahy3g0339 465 MobiDBLite consensus disorder prediction 28 44 - -
Ahy3g0339 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 462 - -
Ahy3g0339 465 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 36 462 - -
Ahy3g0339 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 443 IPR011598 GO:0046983
Ahy3g0339 465 MobiDBLite consensus disorder prediction 138 195 - -
Ahy3g0339 465 SMART finulus 399 449 IPR011598 GO:0046983
Ahy3g0339 465 Coils Coil 433 453 - -
Ahy3g0339 465 MobiDBLite consensus disorder prediction 12 27 - -
Ahy3g0339 465 MobiDBLite consensus disorder prediction 101 121 - -
Ahy3g0339 465 Pfam Helix-loop-helix DNA-binding domain 398 444 IPR011598 GO:0046983
Ahy3g0339 465 Gene3D - 394 465 IPR036638 GO:0046983
Ahy3g0339 465 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0339 Ahy-Chr3 3565848 3569829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0339 12 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.344 9.55e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g0339 HLH 6.40E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0339 - - adu:107476789 784.637