Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0328 ATGAGTTGGAATCCACACATGGAAATCCACCATTACAATAACATCAGCTATCCCTATAGTACAGCAGGAAGCTTTATTGAATATTTCGAAGGTCTCACATATGAACATGTCAATTTCATCTTTTCTGGTGCATCACATGCTCAGGAAAGTTCATACCCTTCAACTACAAGCTTTTATAAGTTTGGACTTTCTGAACCTGACAGCACTTCATACTATCGTTATAATCATGGTTATGATGTAAATCATCATCATGAACCACTGGTTGACGAATATAGGAGGCCTTTGGAAAACTCAACGACTGTCAATGAGCATACTGCAGCTGTAAATACAGAATGGGGAGAAGGGGTAAACAATACCACACGAGACAATTCTATTGAGTGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTTGTTTGGCAAGACAGTATTGATCCTGACAACATGACCTACGAGGAACTACTTGAATTAGGTGAAGCTGTTGGAACCCAAAGCCGTGGTCTTACCCAAGAGCAGATTTCGATGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTCAAGGAAGAAGTCGAAGGATGAGAGGTGTGTGATTTGCCAGATGGAGTATAAAAGAGGGGACAAGCGGATCACTTTGCCTTGTAAACATCTCTATCATGCTAGTTGCGGGACCAGATGGCTTAGCATCAATAAGGCTTGTCCTATATGTTACAGGGAAGTGTTTTAG 732 0.4098 MSWNPHMEIHHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSTTSFYKFGLSEPDSTSYYRYNHGYDVNHHHEPLVDEYRRPLENSTTVNEHTAAVNTEWGEGVNNTTRDNSIECPRRHHSNSNDYQVVWQDSIDPDNMTYEELLELGEAVGTQSRGLTQEQISMLPVSKYKCGFFSRKKSKDERCVICQMEYKRGDKRITLPCKHLYHASCGTRWLSINKACPICYREVF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0328 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
Ahy3g0328 243 Pfam Ring finger domain 197 238 IPR001841 -
Ahy3g0328 243 SMART ring_2 198 238 IPR001841 -
Ahy3g0328 243 ProSiteProfiles Zinc finger RING-type profile. 198 238 IPR001841 -
Ahy3g0328 243 SUPERFAMILY RING/U-box 189 242 - -
Ahy3g0328 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 243 IPR013083 -
Ahy3g0328 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0328 Ahy-Chr3 3435400 3439309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0328 4 243 C3H Transcription Factor Family AT3G63530 42.683 5.34e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0328 K19045 - gmx:100805963 456.062