Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0302 ATGGAGAAGCAATCAGATGATGATCAAGATCATAGAAGAACAGCAGAAAAGGTTGTTGTGAGTAGTAGCAGTGATTATGGGAATGAAGTGCAAGCAGTGAATAATGTGAATCCAACAAGGTCATATGAATGCAACTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTTGGAGGTCACATGAACCTTCATAGGAAGGACAAAGCAAAGATCAAAGAGCAGCAACAGTTTTCTTCTTCTTCTTCAAATCAAACTACTCATCATCAACAATTTTTATTGGAGGGGAATCTTGGTAGTAACAATGATAATAATAAAGAGCTTTTGAATGTGCCTCATCAACCAGTTATGGACGATGAAACCAATAATAACAATGTTGTGATGATGAGGCAGTTACCACTCTTTTCAGAATCATCATCATCACCTCATCATCATCTTCAACAGCAAGAGGATCAAATTTCTGGTCAACAAGGTCCCTCATCATCTTCAGAATTAGACCTTGAACTAAGATTAGGGCTTGAGCCTCCACAAGGATCTAATTCATCATCAGCTACAATAACGGGTACTAGAAAATTCTTTTGA 579 0.3817 MEKQSDDDQDHRRTAEKVVVSSSSDYGNEVQAVNNVNPTRSYECNFCKRGFSNAQALGGHMNLHRKDKAKIKEQQQFSSSSSNQTTHHQQFLLEGNLGSNNDNNKELLNVPHQPVMDDETNNNNVVMMRQLPLFSESSSSPHHHLQQQEDQISGQQGPSSSSELDLELRLGLEPPQGSNSSSATITGTRKFF* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0302 192 MobiDBLite consensus disorder prediction 67 88 - -
Ahy3g0302 192 Pfam C2H2-type zinc finger 42 66 - -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 136 192 - -
Ahy3g0302 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 1 18 - -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 174 192 - -
Ahy3g0302 192 SUPERFAMILY beta-beta-alpha zinc fingers 39 69 IPR036236 -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 136 163 - -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 1 26 - -
Ahy3g0302 192 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Ahy3g0302 192 PANTHER OS07G0101800 PROTEIN 34 181 - -
Ahy3g0302 192 Gene3D Classic Zinc Finger 19 96 - -
Ahy3g0302 192 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 34 181 - -
Ahy3g0302 192 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0302 Ahy-Chr3 3205268 3205846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0302 16 124 C2H2 Transcription Factor Family AT5G06070 36.697 2.64e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g0302 zf-C2H2_6 2.00E-05 CL0361