Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0241 ATGGTTAATTGCTTGATGTTACTAACAAAAGTTGGTGAGACCAAAACCAATAACCATCCATTGAAGGGTGGTGGCTTTAAGTGCAAGACATGTCATAGGAGGTTCCTATCTTTTCAAGCACTTGGAGGACACAGAGCGAGTCATAAGAAGCTTAAGCTCATGATGGGTGCAGATCTTTCGTGTCAATTACCGTCAAGTTCTTCGTTATCATCGTGGAACATGATGACGAAGAACAAGATGCACTCGTGTTCTATTTGTGGGCTGGAGTTTGCGGTTGGACAAGCCCTTGGAGGACATATGAGAAAGCATAGAAATGGTGGAATGGTAATTCATGATCATGGTGCCATGACCAAATCTACTAGTGATGGTAGTGTTAAAACTAGAAGGTTTAATTTGTGCTTAGACTTGAACCTCACGCCCTCTGAGAATGATCTCAAGCTTAATTAA 447 0.4161 MVNCLMLLTKVGETKTNNHPLKGGGFKCKTCHRRFLSFQALGGHRASHKKLKLMMGADLSCQLPSSSSLSSWNMMTKNKMHSCSICGLEFAVGQALGGHMRKHRNGGMVIHDHGAMTKSTSDGSVKTRRFNLCLDLNLTPSENDLKLN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0241 148 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Ahy3g0241 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Ahy3g0241 148 PANTHER ZINC FINGER PROTEIN ZAT12 1 145 - -
Ahy3g0241 148 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Ahy3g0241 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Ahy3g0241 148 PANTHER ZINC FINGER PROTEIN ZAT5 1 145 - -
Ahy3g0241 148 Pfam C2H2-type zinc finger 81 104 - -
Ahy3g0241 148 Pfam C2H2-type zinc finger 26 50 - -
Ahy3g0241 148 SMART c2h2final6 81 103 IPR013087 -
Ahy3g0241 148 SMART c2h2final6 26 48 IPR013087 -
Ahy3g0241 148 Gene3D Classic Zinc Finger 23 103 - -
Ahy3g0241 148 SUPERFAMILY beta-beta-alpha zinc fingers 26 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0241 Ahy-Chr3 2700759 2701429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0241 1 148 C2H2 Transcription Factor Family AT2G28710 46.104 4.11e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g0241 zf-C2H2_6 5.80E-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0241 - - adu:107476874 292.352