Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0179 ATGTCACCAAAGTCGTTGATGGCGACGAACCGTTTCGTATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTTCCATGGAAGCTAAAGCAAAGAAACAAAGAAGAACAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCATGACCCTTGTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTACAGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATGCCAAGATCTGCGGGACTCGGGAGTACAAGTGCGACTGCGGCACCATTTTCTCCCGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAGGTGCAAGAATAAACTCAGTTCCAACAACTTTGAGCAACTTGATGGATAGAAGAGATCATCATCATCACCATCATCAATTAGCAACAAGTAGAATCATCCCTCGTCATCACATTCTTCCAAGTGCTGGATTTCACTCGGAATTTGGTGGTGGTGGTGGCAGTGGTGGTGGTTATTATTCAGATCAGAAGCTGATGATGATGAGGAACAATAATATTCAGATTCCACTATGGTTAGACCAGGGCAATAGCAATAACAATCATAATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCAATGGCAACACTATCATTATGCCTCATCATGATGTAGTGAACAACTCTATGTTTGGATCACAACAATGGCAGCAGAATCCAGAAGCATCATCATCATCACTCACAAACAATAACAACAATGCCAACGTGGCTATGATGATGCCACCACCACATGCAGGATTAAAGCAAGAACAAGATGACATGTTCTATTTTGGTGCTAGTAATTACCATCATCATCACATAATGTTACAAAAAGCATCACAAATTGGAGGAGGTGATGAGTTGGTGAATTTGGAAGGTAGCATCAGTAGTATTCCTCCATTAATATTGAATCCAACAAGGAGGCCATCAAAGAATGATAATAAAGATGAAGATGATGAACTGGGTTTAACAAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGCAACACTAGGCCATTGATGTTACAGCAACACTTAGCTGACTTCACAGCCATGGATATGCATCATCAAACCCACTACAGTAGTAGTAGTGGACATTACTACTTACAGGTAAATGATGAAGAAATAGATGGATGA 1281 0.4262 MSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHAKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEEGARINSVPTTLSNLMDRRDHHHHHHQLATSRIIPRHHILPSAGFHSEFGGGGGSGGGYYSDQKLMMMRNNNIQIPLWLDQGNSNNNHNHVSGISSNTSSACTNGNTIIMPHHDVVNNSMFGSQQWQQNPEASSSSLTNNNNNANVAMMMPPPHAGLKQEQDDMFYFGASNYHHHHIMLQKASQIGGGDELVNLEGSISSIPPLILNPTRRPSKNDNKDEDDELGLTRDFLGVGEDESTMSNTRPLMLQQHLADFTAMDMHHQTHYSSSSGHYYLQVNDEEIDG* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0179 426 Gene3D Classic Zinc Finger 8 35 - -
Ahy3g0179 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Ahy3g0179 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 386 - -
Ahy3g0179 426 Pfam Zinc finger, C2H2 type 12 34 IPR013087 -
Ahy3g0179 426 Gene3D Classic Zinc Finger 46 137 - -
Ahy3g0179 426 SUPERFAMILY beta-beta-alpha zinc fingers 11 109 IPR036236 -
Ahy3g0179 426 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Ahy3g0179 426 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 386 - -
Ahy3g0179 426 SMART c2h2final6 54 84 IPR013087 -
Ahy3g0179 426 SMART c2h2final6 89 109 IPR013087 -
Ahy3g0179 426 SMART c2h2final6 12 34 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0179 Ahy-Chr3 1939220 1942030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0179 1 173 IDZ Gene Family AT3G45260 75.275 1.10e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g0179 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0179 K25870 - ahf:112736536 463.381