Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0173 ATGGCTTCAAACTCCAAAACCGAAAACAAGACGAAGAAGAAGAACACCAAAACCGTCACCAAACAAAATTCCAAGACTATCACCAAATCAAAGAAGGAGAACAAGAATAAGAACAAGAAGAAGGAGAACGTCTCAGATAATAAGAAGAACAAGAAGAGGGAGAATGAGAATGCGAACAAAAAGAACAACAAGAAGAAGAAGAAGCTCACACACAGCAATGGCAACTCGAAGCACCGCGGTGGTGAATCGCTGGTTGCTCCTAGCTCCAGCTCCGAGTCACAGCAAAAGCGAGAAGTAGAATCAGTTGAACAAGAAGAGGAAGATAGCACTGTAGTCTCCAATGGACGAACCGATGGCAAAAAACCTAAGAAATCGAAGCGGAATCGGGAGGAAGTGGAAAAGGAAGACGAAGGAGACGCGAAATCGCACGTGTTTCCGATGAATCGTATAAGAACAATTGTCAAGGCCGAAGATCCCGATTTGCGCGTTTCTCAGGAAGCGATTTTCGTCGTCAACAAAGCTGCGGAGAAGTTCCTTGAACAATTTGCGCAGGACGGTTATGTTCGGTGTGTCCAAGAGCGTAGGAAATCTCTGAGCTACAAGCACCTAGCGCATGTTGTGAGTAAGCAGCGGAGATATGAATTTCTTTCTGATTTTGTTCCTGAGACAATGAAAGCTGAGGATGCATTATGA 693 0.4459 MASNSKTENKTKKKNTKTVTKQNSKTITKSKKENKNKNKKKENVSDNKKNKKRENENANKKNNKKKKKLTHSNGNSKHRGGESLVAPSSSSESQQKREVESVEQEEEDSTVVSNGRTDGKKPKKSKRNREEVEKEDEGDAKSHVFPMNRIRTIVKAEDPDLRVSQEAIFVVNKAAEKFLEQFAQDGYVRCVQERRKSLSYKHLAHVVSKQRRYEFLSDFVPETMKAEDAL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0173 230 Coils Coil 27 68 - -
Ahy3g0173 230 MobiDBLite consensus disorder prediction 96 143 - -
Ahy3g0173 230 MobiDBLite consensus disorder prediction 1 143 - -
Ahy3g0173 230 Gene3D Histone, subunit A 89 222 IPR009072 GO:0046982
Ahy3g0173 230 MobiDBLite consensus disorder prediction 26 61 - -
Ahy3g0173 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 145 207 IPR003958 -
Ahy3g0173 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 10 230 - -
Ahy3g0173 230 SUPERFAMILY Histone-fold 92 216 IPR009072 GO:0046982
Ahy3g0173 230 MobiDBLite consensus disorder prediction 76 95 - -
Ahy3g0173 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 10 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0173 Ahy-Chr3 1902867 1905803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0173 113 206 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.667 9.35e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy3g0173 CBFD_NFYB_HMF 6.10E-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0173 - - adu:107476944 290.041