Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0159 ATGCCGCCAAAGTTCGATCCATCTCAAGTCGTCGACGTCTACGTCCGCGTCACCGGAGGAGAAGTCGGCGCCGCCAGTTCCCTCGCCCCTAAGATCGGTCCCCTCGGTCTCTCTCCAAAGAAGATCGGAGAAGACATCGCTAAAGAAACCGCCAAGGATTGGAAGGGTCTCCGAGTGACCGTGAAGCTAACGGTTCAGAACCGTCAGGCGAAGGTGTCCGTCGTGCCGTCCGCCGCCGCGCTAGTCATCAAGGCACTCAAGGAGCCGGAGCGTGACCGGAAGAAGACGAAGAACATCAAGCATAACGGGAACATCTCGCTTGATGACGTCATCGAGATTGCTAGGGTTATGAGGCCGAGGTCGATGGCGAAGGAGCTCAGCGGCACTGTGAAGGAGATCTTGGGAACTTGCGTCTCCGTCGGGTGCACGGTGGACGGTAAGGACCCTAAGGATTTGCAGGAGGAGATTACTGATGGTGATGTCGAAGTGCCTCAGGATTGA 501 0.5709 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEITDGDVEVPQD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0159 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Ahy3g0159 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Ahy3g0159 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Ahy3g0159 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ahy3g0159 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Ahy3g0159 166 Gene3D - 1 81 IPR036796 -
Ahy3g0159 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ahy3g0159 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Ahy3g0159 166 Gene3D - 82 164 IPR036769 -
Ahy3g0159 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 - -
Ahy3g0159 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ahy3g0159 166 MobiDBLite consensus disorder prediction 145 166 - -
Ahy3g0159 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0159 Ahy-Chr3 1724703 1725512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0159 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 89.759 3.53e-109 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0159 K02870 - twl:119995694 322.398