Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0122 ATGAAGTTTTCTTCTAATAATACCCCACCCCCTCATAAGGTTAGCATCAATAATAATAATAATATTAATAATAAAGATCGTCACAGAAAGGTTAATGGAAGAGAAAGTCGCATTCTGTTGCCACCGTTATGTGCTGCGCGCGTGTTCCAGCTCACGCGCGAGCTAGGGCACAAGACTCATGGTGACACAATTGAGTGGCTCTTGCGCCACGCCGAACCTTCCATAGCCGCTGCAACTGGCGGCAAAAGTATAGTGCCACCACCACCATCATCATCGAACACCAATGATAATCAAGGTGTGAAAAATGGTGGTGGTGACACTGGGTGGTTGGAGTATGATGTTCTTGCAAACCTTGGTGTAGGGTTTTCTGCCAATGAAATTGCAGTGATCCAAGCAATGATCAAGAGCTTCAGCTGA 417 0.4556 MKFSSNNTPPPHKVSINNNNNINNKDRHRKVNGRESRILLPPLCAARVFQLTRELGHKTHGDTIEWLLRHAEPSIAAATGGKSIVPPPPSSSNTNDNQGVKNGGGDTGWLEYDVLANLGVGFSANEIAVIQAMIKSFS* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0122 138 Pfam TCP family transcription factor 24 95 IPR017887 -
Ahy3g0122 138 ProSiteProfiles TCP domain profile. 24 78 IPR017887 -
Ahy3g0122 138 MobiDBLite consensus disorder prediction 79 104 - -
Ahy3g0122 138 MobiDBLite consensus disorder prediction 1 22 - -
Ahy3g0122 138 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 81 IPR005333 GO:0003700
Ahy3g0122 138 MobiDBLite consensus disorder prediction 85 102 - -
Ahy3g0122 138 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 23 81 - -
Ahy3g0122 138 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0122 Ahy-Chr3 1322159 1322575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0122 24 93 TCP Transcription Factor Family AT5G41030 58.667 8.09e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy3g0122 TCP 1.20E-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0122 - - ahf:112736155 245.358