Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0093 ATGCTCGCATTCCGGCCATGCTTCTTCAATCCACCACTCTGCCGCCCCATTTCCGTTAAAGTTCTCTCCTTTTTCGCATTTCCTTCTTCTCTTTCCTCTCACATTCTCTCTCTCCCTTTCCCCCATCGCACAATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCTCGCGCCGCCGCCGCCGCCGCTGCCAAGAAGAAGAAATCCGAGCAGTCGCAGCAACCAACTGTTTCTTCTCCCAAGAAACGAAAACCTTCACCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGACCCCAAACCCTCCGAAACCGTTCCTACGCCAACGAGTGACCCGCCCAAGCAAGAACCGGAGAAAGAAGGCCCTCCTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCATTCCGCAGCTGAAGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTGCTGGCTTTGGCGCTTGAAATGATTTCTGCGGAACCTGGCAGAATCAAGATGACAGATATTGTGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTCGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTGGAATTGGGAATTGGCGAGACTTCGATTATTAAGGCACTTGCTGAGGCAACTGGAAGTACTGAATCCAAAATCAAGAAGCAGTATCAGGGCGAGGGTGATTTGGGAAGAGTTGCCAAGATATGCCGTTCATCTCAGTCCATGATGCGGAAGCCTGAGGCTCTGACTATTAGGAAAGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAAAGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTGCTGCAACTGACTGCGAACCTCAATATCTTATCTGTCTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGATGGCATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTACTCTGTTCTTCCTGTCTACGACGAAATAGTATCTGCACTTCTTACGCATGGTGTATGGAAACTTCCATCAACATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCAACGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGGAGTTTACTTGTGAATACAAGTATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACCGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATGATCGTGAGAAACAGACCATCCGTTCCTTCCAGGATCTTACTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACATTGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGCGTCAAGCTGTGAGGGATTAATCATTAAAACTTTAAGTGAAGATTCTACATATGAACCTTCCAATCGGTCACACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCACTAGATTTGGTACCTATAGGTGCATTCTACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGGAACGGGATTTACTGAAGACGTGCTCGAACAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCAATGTGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATTAGCCCAGTTTACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGCTCAAAAAGCCGCTCAAACTAAAGAAAAAGAAAAAGAAAAAAACAAACAGGATGGTAGTGAGTCACCAAAAAAACAGATTGGCAGTGAGTCACCAAAAAAACAGATTGGCAGTGAAGACAAAGACGAAGACGAAGTCGCAGATGAAGATGAAGATGAAGATGTAGATGTAGATGCAGATGAAGATGAAGATAAGTGA 2514 0.4459 MLAFRPCFFNPPLCRPISVKVLSFFAFPSSLSSHILSLPFPHRTMTKPPSAFDALMSGARAAAAAAAKKKKSEQSQQPTVSSPKKRKPSPSTLPTPTSTLNPNDPKPSETVPTPTSDPPKQEPEKEGPPPTKTRHVSSSSALQELKKRIPQLKAKPSKFDPSSVACWEKGTPVPFSLLALALEMISAEPGRIKMTDIVCNLMKTVIYSTPEDLVPLIYLFAKRVAPAHEGLELGIGETSIIKALAEATGSTESKIKKQYQGEGDLGRVAKICRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQKKKKNHIKALLVAATDCEPQYLICLLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPDGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPTKGISDILNSLQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYDREKQTIRSFQDLTTRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDIEEIQKFLDKAVASSCEGLIIKTLSEDSTYEPSNRSHNWLKLKKDYLDNIGDSLDLVPIGAFYGRGKRTGVYGAFLLACYDYNNEEFQSICKIGTGFTEDVLEQRSKSLGSQVIPGPKRYYQCGDKMKPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNAQKAAQTKEKEKEKNKQDGSESPKKQIGSESPKKQIGSEDKDEDEVADEDEDEDVDVDADEDEDK* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0093 837 Gene3D - 150 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy3g0093 837 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 69 787 - -
Ahy3g0093 837 Gene3D DNA ligase/mRNA capping enzyme 445 570 - -
Ahy3g0093 837 MobiDBLite consensus disorder prediction 772 837 - -
Ahy3g0093 837 PANTHER DNA LIGASE 1 69 787 - -
Ahy3g0093 837 MobiDBLite consensus disorder prediction 63 143 - -
Ahy3g0093 837 CDD OBF_DNA_ligase_I 628 773 - -
Ahy3g0093 837 Coils Coil 768 788 - -
Ahy3g0093 837 MobiDBLite consensus disorder prediction 814 837 - -
Ahy3g0093 837 Gene3D - 625 788 IPR012340 -
Ahy3g0093 837 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 408 626 - -
Ahy3g0093 837 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 156 406 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy3g0093 837 MobiDBLite consensus disorder prediction 776 795 - -
Ahy3g0093 837 CDD Adenylation_DNA_ligase_I_Euk 405 623 - -
Ahy3g0093 837 ProSiteProfiles ATP-dependent DNA ligase family profile. 522 658 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy3g0093 837 ProSitePatterns ATP-dependent DNA ligase signature 2. 594 620 IPR016059 GO:0003909
Ahy3g0093 837 Gene3D - 426 624 - -
Ahy3g0093 837 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 440 448 IPR016059 GO:0003909
Ahy3g0093 837 Pfam DNA ligase N terminus 174 349 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ahy3g0093 837 Pfam ATP dependent DNA ligase domain 416 620 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ahy3g0093 837 Pfam ATP dependent DNA ligase C terminal region 645 756 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ahy3g0093 837 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 232 771 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ahy3g0093 837 MobiDBLite consensus disorder prediction 70 106 - -
Ahy3g0093 837 SUPERFAMILY Nucleic acid-binding proteins 628 774 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0093 Ahy-Chr3 920569 927336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0093 1 775 Core DNA Replication Machinery Family AT1G08130 62.324 0.0 974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0093 K10747 - aip:107642653 1285.01