Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0084 ATGGCGGCTGCATCATCTGATGAAGGTGGTGGTGGATTCCCACCTATGACGCAATACTCATCATCATCATCATCATCATCATCATCATCCACCATGTACCATTATCTCTCAGTTCTCAATGATAAAATCAACGAGTTGCAGTCACTTGTGGGGGTTATAGCCTCCCCCAATCGGCACCACTCATCAATTCCTTGTTCTTCCTATTCCATGGCCATATCCACCAAGACCTCCACCATCCAAGATATCATACTTGCTTCCTCTTCATTCAGACTCACCTTCCAACAACACATCAATAGTTATAACAATCCATCATCATCAGGTACCATTATTGCTCCTTCTTGCAATAATCAACAATTAGAATTGCACCCTCATCACCACCACCAATCTTATGATTATAATAATAGTAATATCATTAGAGGAGGTACTAGTAGTGTTGCTAATCATGAACCTGCACAAGAAGAAGACGAAGAAGATGAAGAAACACTCCATTGGTTTTCTGAACCCTACAACAATAACAATAGTACTGTTATTTATTGTGATGATGATAACAATAATACTAAGGATGAAGATGGAGAAGAAGAAACAGATATAATTGAGTTGGATGCTGCTGATTTGTTAGCAAGCTACACACATTTCTGCCAAATATGTGGGAAAGGATTTAAGCGCGAAGCGAATCTGAGGATGCATATGAGGGCTCATGGGGATGAATTCAAAACCAGTGAAGCCTTGAAGAACAACAAGAATAACAAGAAGATGATGATAACGAAGAAGAAGAAGTATTCGTGCCCTGAAGATGGGTGCAGGTGGAACAAGAATCATGCCAAGTTTCAGGCACTGAAATCAATGGTGTGTGTGAAGAATCACTACAAGAGAAGCCATTGCCCAAAGATGTATGTTTGCAAGAGGTGCAACAACAAGAACTTCTCTCTGCTCTCTGATTTGAGGACCCATGAGAAGCACTGTGGTGATCCCAATAAATGGTTGTGTTCTTGTGGAACCACTTTCTCAAGAAAAGACAAGCTCTTCGGACATCTTGCTTTGTTCCTTGGCCACTCCCCAGTTCATGCTGCTACTCAACGATCATAA 1086 0.4107 MAAASSDEGGGGFPPMTQYSSSSSSSSSSSTMYHYLSVLNDKINELQSLVGVIASPNRHHSSIPCSSYSMAISTKTSTIQDIILASSSFRLTFQQHINSYNNPSSSGTIIAPSCNNQQLELHPHHHHQSYDYNNSNIIRGGTSSVANHEPAQEEDEEDEETLHWFSEPYNNNNSTVIYCDDDNNNTKDEDGEEETDIIELDAADLLASYTHFCQICGKGFKREANLRMHMRAHGDEFKTSEALKNNKNNKKMMITKKKKYSCPEDGCRWNKNHAKFQALKSMVCVKNHYKRSHCPKMYVCKRCNNKNFSLLSDLRTHEKHCGDPNKWLCSCGTTFSRKDKLFGHLALFLGHSPVHAATQRS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0084 361 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 358 IPR044300 GO:0010044|GO:0010447
Ahy3g0084 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Ahy3g0084 361 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Ahy3g0084 361 Gene3D Classic Zinc Finger 207 268 - -
Ahy3g0084 361 SMART c2h2final6 298 320 IPR013087 -
Ahy3g0084 361 SMART c2h2final6 260 293 IPR013087 -
Ahy3g0084 361 SMART c2h2final6 211 233 IPR013087 -
Ahy3g0084 361 Pfam C2H2-type zinc finger 211 233 - -
Ahy3g0084 361 MobiDBLite consensus disorder prediction 1 27 - -
Ahy3g0084 361 PANTHER OS08G0562300 PROTEIN 19 358 - -
Ahy3g0084 361 SUPERFAMILY beta-beta-alpha zinc fingers 210 267 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0084 Ahy-Chr3 757410 758701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0084 14 359 C2H2 Transcription Factor Family AT5G22890 45.763 1.65e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy3g0084 zf-C2H2_6 4.60E-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0084 - - gmx:100803120 328.946