Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy3g0077 | ATGCTCCTTCAAAACTTACTAATCTTCCTTATCCTCACAAGAGAAAGATACACATACTTGATGGTGATGATGGAATTCCAGAACCGCAGAGTGCTACTACTCCTCAACAAGGATGTTCCAATATCTTCACCGCCGCCGCCGCCGACAGCGTCGTCAACTCCGGCGATGGCCATGTATGGATCATCGTCATTGCAAGTACCAGCTCGTCCGATGTTCAGTTCAAACATAGCCTACGCCTTCATCATCCTCCTCACCACGCTCTTCTTCCTGGCCTTCATCCTCCTCTTCCTCCGCCAATTCTCGTCCTCCGGGAGCAGAAGCCGTTGCTCGGAGGAAACGACGGAGAAGTGGGCGCTGCCGACAGTTGCGTACAGTAGGGGGAAGAGGAAGGTGAAAGAGCAGGAAGAGGAGTGCGTGATATGTTTGGAAGAGCTTCGCGAGGGTGAAACGGTAAAAATGATACCTCACTGCAAACACGTGTTCCATCCTAACTGCATTGACACGTGGCTCCTCACTCACGTGACATGCCCCGTGTGCAGATGCCCCAAGGTTTGTGAAGAAGAAGAGAATGATGAGGGAGAAACAAGAATAAGAAGAGAGGTAGTTGAAATTCAGTTACAAGAGTCTCAAACTGAAAGAGCGGTGAGTAGTGATGAGAGAAGAGAAGCAACTGGGTTGAGGAGATCACTTAGCTTCTGA | 699 | 0.4979 | MLLQNLLIFLILTRERYTYLMVMMEFQNRRVLLLLNKDVPISSPPPPPTASSTPAMAMYGSSSLQVPARPMFSSNIAYAFIILLTTLFFLAFILLFLRQFSSSGSRSRCSEETTEKWALPTVAYSRGKRKVKEQEEECVICLEELREGETVKMIPHCKHVFHPNCIDTWLLTHVTCPVCRCPKVCEEEENDEGETRIRREVVEIQLQESQTERAVSSDERREATGLRRSLSF* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0077 | 232 | MobiDBLite | consensus disorder prediction | 208 | 232 | - | - | |
| Ahy3g0077 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 184 | IPR013083 | - | |
| Ahy3g0077 | 232 | SMART | ring_2 | 138 | 179 | IPR001841 | - | |
| Ahy3g0077 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL6 | 70 | 211 | - | - | |
| Ahy3g0077 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 138 | 180 | IPR001841 | - | |
| Ahy3g0077 | 232 | SUPERFAMILY | RING/U-box | 132 | 184 | - | - | |
| Ahy3g0077 | 232 | Pfam | Ring finger domain | 137 | 180 | IPR001841 | - | |
| Ahy3g0077 | 232 | CDD | RING-H2_PA-TM-RING | 137 | 180 | - | - | |
| Ahy3g0077 | 232 | PANTHER | RING FINGER DOMAIN-CONTAINING | 70 | 211 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy3g0077 | Ahy-Chr3 | 715916 | 717633 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy3g0077 | 72 | 232 | C3H Transcription Factor Family | AT2G27940 | 31.980 | 1.47e-25 | 98.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy3g0077 | - | K10664 | aip:107634124 | 377.481 |