Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0063 ATGGAGCCACCGGTTGTTAGATCGAGAGGGAGGCCGCGGAAGCGTAGAAGAAAAGAGGAAGAAATGGAAGCTCTGGAAGCAAAGAGGCAAGCCTTGGCAACCAGATCGATAGCGTTGGTTGGACGATTCGTGCTGAAGGAGTTCCCGAAAATCGGTGTTTTCCTCGGTAAAGTTGTGTACTACGAGTGTGGCTTGTATAGAGTTAGTTATGAGGACGGTGATTTCGAGGATTTGGATAGTGGTGAGGTTCGTGCTGTTCTACTAAATGACAGTGATTTTGATGATGATTTGACTAAGAGGAAGGGTAAATTGGAGCAATTAGTGTTGAAGAATAGTGTAAAGGTTCAAGCTAAGTCGGTGAAGGCTTCTGATGAGATGAATAAAGATGAATCCAAGGTTGATGGACCTGTTTCGGGAGAACTTAACGGTGAAAACGGTGAGGAACAAGCTGAAGGTGGCGATGATTTGTTGAGTGATGATTATTCTGATTCAGATGCTGAGGCAGTGCCTGCGGTGCCACCGCGGCCGCCTTTGTTGCAGTTGCCACCATCGTCAGGGACTATTGGTGTGCCGGAGCAGTGTGTTTCGCACCTTTTTGCTGTTTATGGTTTCTTGAGATCATTCAGCACTAGGTTGTTCCTGGCACCGTTTACTTTAGATGATTTTGTTGGTTGTCTTAATTGCCGAGTTGCTAACAGCTTGATTGATTCTATTCACGTCTCCCTATTGCGGGTATTGAGGCATCATCTTGAATCCGTTTCATCTGAAGGCTCAGAGCTTGCATCGAAATGCCTTAGGTGCAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTGATTCAATATTTATTAGTTAATGGACACACAAAAGGACCTGAATGGAAAGGGTTTTATGATGAGGCTTTTGCTTGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAATGATATTGCAAAAACTATGCGATGATGTTTTGGATTCAGAGGAGCTAAAAGCTGAAATGAACATGCGGGAAGAATCAGAGGTTGGGGTGGATTATGACGCAGAAGATATCATTGCTGCAGAAAATGGGCCTGGAAAAGTCCTACCAAGACATGCCAATACTGCTTGTGAGGATAAAGGAGCCATGAAGATAGTTTTGGCATCAAATTTTGTGAACCAACATGTTAACCCTAATAATTCCAATTCCAGAAATGCAGGAAACGTTGGTGATGGCGATGATAGAAATGGAGATGAATGTCGTCTTTGTGGTATGGATGGGACCTTGATTTGTTGTGATGGGTGCCCCTCTGCTTATCACTCCAGGTGTATTGGTGTTATGAAAATGCATATACCAGAAGGACCGTGGTATTGTCCAGAATGCAAGATTAACATGATTGGGCCAACAGTTGCAAAGGGAACATCACTTAGAGGTGCTGAAATATTTGGAATGGATTTGTACGGGCAGCTTTTCATGAGTTCTTGCGACCACTTATTGGTGCTCAATGTCAACAATGATGAATTCTGTCTTAAATATTACAACCAGAGTGACATTCCTAATGTTATCCAAGTGCTTTGCGGATCCTTGCAGCATAGACCAATATACTATGATATTTGCATGGCAGTTATGCAATATTGGAATATTTCTGAAAGAGTCTTGCCTCTTCCTCCTCCGTCAAGTGAAGATGGTCATAAGCCTGTTAGCTTGGTGAATGGAGAGTACTCTCACACTTTGAGCTTGATTTATAGTGGCAATGTAGTCCCTTCATATGATACCTCAACAACTAACACTGTAAATCATGGTCCCGAAAGCAGCGGTAATGAGCTCCCTACCACAAATATGAAGCTTCCTCAGGAAACTAGGATGGTGTCACTAATGTCAAATGATTCTGGGTCTGTTTCTGTTAGTAATCAGTCTGAGTTGAACTATCGAAGTTCTGTCAATGGGTTAACTGTGGTGGCTTCTTCACGCTCTTTGATAAACAGCCAATATAGTAATAATGCCCATTCAAATGATATTGTGCTGCCAGTGAAATTTTCTCTGGAAACCAAAGAGAGCACCCGAGTTGGCTTTGGAAAGGTGGAACACAAAACAACTAACAATGTTGGGTACATGGGTTTGTCCTATAAACCTTTGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTGGCCGTTCTATCCTCAGAGGAATCTAGGTCAGAGGGTCATGTTTCCGACAGTCAGAAGAAAACGATAGCTCAGATCACATATTTGCAAGCAAAAGCGTTCTCACAAATAGCTTCACGTTTCTTTTGGCCAGCTACTGAAAAGAAGCTAATGGAGGTTCCAAGAGAGAGATGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGTTTCAAGCAAGAGAGGATGCATGTTAAATCATGCCCTTATAAATGCCACAAAAAGTGCGCTGAAAGTTCTTGCTGGTTTTCCTCCACTAAGGAGTGGAGAGGGAATCCTTCCTAGTATTGCAACATACATTTTATACATGGAGGAATGTTTACATGGTTTAATAGTTGGGCCCTTTCTAAGTCCAAGTTATAGAAAGCAATGGCGAATGCGGGTTGAACAGGCCACAACATTTAGCTCTATCAAACCACTCTTGCTTGATCTTGAGGAAAATATTCGCATGATTACTTTCTGCGGGGATTGGCATAAGTTGATGGATGATTGGTTGGTTGAATTTTCTATGATTCAAAGGTCTGCATCTGCTCTTGGAACAACACAGAAACGTGCACCAAGTGGGAGGCGTTACAAGAAACGCTCAGCTACTGAAGAACCTACAGCTGATGGTTGCCATGAAAGCTTTGAGTGGTGGCGGGGTGGGAAATTCACCAAGTTTATATTCCAAAAAGCTGTTTTGCCAAGATCCCTGGTCAGGAAAGCTGCACGCCAAGGTGGTTCGAGGAAAATCTCTGGTATTTTCTATGCTGATGGATCTGAAATCCCTAAAAGGACCAGACAGTTTGTGTGGAGAGTTGCAGTACAGATGTGTAAGACTGCATCACAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATATCAGATGGAGTGATCTAATTCGTCCAGAGCAGAATATTCAGGATGGTAAAGGTCAAGAAACTGACGCTTCTGCTTTCAGAAATGCAAATATTTGTGATAAAAAGCTTGTAGAGGGGAAAACTTGTTACGGAGTAGCATTTGGGAGCCAAAAGCATCTTTCTACTCGTTTAATGAAAAATGTTATTGAAATTGAGCAAGGTATAGAAGGAAAGGAAAAGTATTGGTTTTCCGAAACACGCATTCCTTTATATTTGGTGAAAGAGTATGAAGAAAGCAATGGAAACGGACCATCTGTTGGTGAGCACTTGAATACTGCATCACAACAATTGCTCAGTCGGTGGTTGAAAGCATCCCGCAAGGATATTTTCTACCTTACCTGCAAGAGAGACAATTTGGACATGTTCTTGTGTTCTGTATGTCATACTGGTGTTCCATTAAGGAATGCGCTCAAGTGCAATACTTGTCAAGGTTTTTGTCACGAGGGCTGTTCCCTAAGGTCAACAATCTTCACAAATAAGAAAGTTGAGTACTTGACCACGTGCAACCAATGTTATCATGCCAAGTTCCTTGCTCAAAAGGAGACCAGTAATGAATCTCCAACCAGCCCCTTACTCTTACAAGGACGTGAAAACAACTCTCTTCCTATCCTAAAGGGATTAAAGTCTAAATATTCTGATCTAGCACAGAAGTCTGCCAAGGCAAAGGATAGCCGTCCAGAAGCAAAACAAGTTGCTTCAATGACAGTTTTGAAGGAAGCAAAGACTTCCGCCAGGTCAAAGGATAGTCATCCGGACAGAAAACAACTTGCTTCTGGTTCCAGCTCGGCAACTGCAACCCGTCGTAGGAATTGTTCTTGGGGTGTGATATGGAAGAAGAAAAATATTGATGATACAGGCGATGAATTTAGGCTCAAAAACATACTTTTAAAGGGAGCTTCAGGAATTCCTCAAGAGCCACCAATTTGTCACTTGTGCCGTAAGAAATACTGTTCCGATCTGATGTACATTCACTGTGAGTCATGCTCAAATTGGTATCATGCTGAAGCTGTTGAACTCGATGAGTCCAAAATTTTTGATGTACTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGATTGTCCTTATGCTGATACTAAGCGCAAGACACAAGAGGGTAAGAGGACAAGGACTTCAAAGAAAGAGTATTCTGGTCCAGATTCTGATTCTGGAACATTTTCTGATATGAAAGAGTGTGAGCCTGCTACCCCTGTCTTCCCAGTAGAGGATGATCCTCTACTTTTCTCTCTTTCAAGCGTGGAGCTGGTTACAGAACCTAAGTTAGAGGATGCTGAGTGGAGTACTCTCTCTGGCCCTGGGCCTCGGAAACTACCAGTGAGACGGCATGTTAAACGTGAGGGGGACTGTGATGGATTTTACGTAGAGAAACCGTTGTATGATGAAACTTTGGCACATAATGAAGCGGGTGATATGTACAAACCCGAGCCTTTAGACTATGACTCTGTCGTGCCGAATGATAGCAATCTACTTAATGAAGTGGAAGGTTCACAGTATGAATTTGCGGACTTTGAACCTCATACCTACTTCTCTGTAACGGAACTGCTGCTCCCAGATGATAGTAGCCAGCTTGAGGGAGCTGATGCATCTGGTGAATTGTCGGGATATTTGGGGAATTCTTGTACACAAGTTCCTGAAGAATGCGGTGTAACTTTAGATGACAAATCAGAACCTGCCCTATCCTTTGAAGACGCTGTTTATAGTTGTTGGCAGTGCGGGCAAATGGAACCAGCCCCTGATCTGTGTTGTGAGATTTGTGGGATTTTTATTCACAGTCAATGCTCTCCTTGGGTTGAGTCACCATCAAGGCTTGGAAATTGGAGGTGTGGCAATTGCCGGGAATGGCAATAG 4989 0.4283 MEPPVVRSRGRPRKRRRKEEEMEALEAKRQALATRSIALVGRFVLKEFPKIGVFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRAVLLNDSDFDDDLTKRKGKLEQLVLKNSVKVQAKSVKASDEMNKDESKVDGPVSGELNGENGEEQAEGGDDLLSDDYSDSDAEAVPAVPPRPPLLQLPPSSGTIGVPEQCVSHLFAVYGFLRSFSTRLFLAPFTLDDFVGCLNCRVANSLIDSIHVSLLRVLRHHLESVSSEGSELASKCLRCNDWGLLDALTWPVFVIQYLLVNGHTKGPEWKGFYDEAFACEYYLLPVSRKLMILQKLCDDVLDSEELKAEMNMREESEVGVDYDAEDIIAAENGPGKVLPRHANTACEDKGAMKIVLASNFVNQHVNPNNSNSRNAGNVGDGDDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMHIPEGPWYCPECKINMIGPTVAKGTSLRGAEIFGMDLYGQLFMSSCDHLLVLNVNNDEFCLKYYNQSDIPNVIQVLCGSLQHRPIYYDICMAVMQYWNISERVLPLPPPSSEDGHKPVSLVNGEYSHTLSLIYSGNVVPSYDTSTTNTVNHGPESSGNELPTTNMKLPQETRMVSLMSNDSGSVSVSNQSELNYRSSVNGLTVVASSRSLINSQYSNNAHSNDIVLPVKFSLETKESTRVGFGKVEHKTTNNVGYMGLSYKPLSYINNYMHGDFAASAAAKLAVLSSEESRSEGHVSDSQKKTIAQITYLQAKAFSQIASRFFWPATEKKLMEVPRERCGWCFSCKAPVSSKRGCMLNHALINATKSALKVLAGFPPLRSGEGILPSIATYILYMEECLHGLIVGPFLSPSYRKQWRMRVEQATTFSSIKPLLLDLEENIRMITFCGDWHKLMDDWLVEFSMIQRSASALGTTQKRAPSGRRYKKRSATEEPTADGCHESFEWWRGGKFTKFIFQKAVLPRSLVRKAARQGGSRKISGIFYADGSEIPKRTRQFVWRVAVQMCKTASQLALQVRYLDFYIRWSDLIRPEQNIQDGKGQETDASAFRNANICDKKLVEGKTCYGVAFGSQKHLSTRLMKNVIEIEQGIEGKEKYWFSETRIPLYLVKEYEESNGNGPSVGEHLNTASQQLLSRWLKASRKDIFYLTCKRDNLDMFLCSVCHTGVPLRNALKCNTCQGFCHEGCSLRSTIFTNKKVEYLTTCNQCYHAKFLAQKETSNESPTSPLLLQGRENNSLPILKGLKSKYSDLAQKSAKAKDSRPEAKQVASMTVLKEAKTSARSKDSHPDRKQLASGSSSATATRRRNCSWGVIWKKKNIDDTGDEFRLKNILLKGASGIPQEPPICHLCRKKYCSDLMYIHCESCSNWYHAEAVELDESKIFDVLGFKCCKCRRIKSPDCPYADTKRKTQEGKRTRTSKKEYSGPDSDSGTFSDMKECEPATPVFPVEDDPLLFSLSSVELVTEPKLEDAEWSTLSGPGPRKLPVRRHVKREGDCDGFYVEKPLYDETLAHNEAGDMYKPEPLDYDSVVPNDSNLLNEVEGSQYEFADFEPHTYFSVTELLLPDDSSQLEGADASGELSGYLGNSCTQVPEECGVTLDDKSEPALSFEDAVYSCWQCGQMEPAPDLCCEICGIFIHSQCSPWVESPSRLGNWRCGNCREWQ* 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0063 1662 Pfam PHD-finger 417 459 IPR019787 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 120 183 - -
Ahy3g0063 1662 ProSiteProfiles DDT domain profile. 192 252 IPR018501 -
Ahy3g0063 1662 SUPERFAMILY FYVE/PHD zinc finger 402 460 IPR011011 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 1404 1434 - -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 1404 1424 - -
Ahy3g0063 1662 SMART PHD_3 1346 1394 IPR001965 -
Ahy3g0063 1662 SMART PHD_3 416 459 IPR001965 -
Ahy3g0063 1662 SMART PHD_3 1161 1210 IPR001965 -
Ahy3g0063 1662 SMART PHD_3 1614 1659 IPR001965 -
Ahy3g0063 1662 ProSitePatterns Zinc finger PHD-type signature. 417 458 IPR019786 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 917 939 - -
Ahy3g0063 1662 ProSiteProfiles Zinc finger PHD-type profile. 414 461 IPR019787 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 1 22 - -
Ahy3g0063 1662 SUPERFAMILY FYVE/PHD zinc finger 1342 1399 IPR011011 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 121 135 - -
Ahy3g0063 1662 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 307 339 IPR028942 -
Ahy3g0063 1662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 463 IPR013083 -
Ahy3g0063 1662 CDD PHD_SF 1346 1393 - -
Ahy3g0063 1662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1335 1412 IPR013083 -
Ahy3g0063 1662 PANTHER PHD FINGER FAMILY PROTEIN 1 1659 - -
Ahy3g0063 1662 Coils Coil 15 35 - -
Ahy3g0063 1662 SMART testlast3 192 252 IPR018501 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 1254 1301 - -
Ahy3g0063 1662 CDD PHD_SF 1614 1658 - -
Ahy3g0063 1662 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1659 - -
Ahy3g0063 1662 Pfam DDT domain 193 248 IPR018501 -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 591 610 - -
Ahy3g0063 1662 MobiDBLite consensus disorder prediction 147 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0063 Ahy-Chr3 597173 604700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0063 27 1662 PHD Transcription Factor Family AT5G35210 41.895 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ahy3g0063 DDT 3.30E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0063 - - ahf:112736410 3206.39