Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0062 ATGGAGCAACAAAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAACGTGGTGGCGATGCCTGATTCTGGAGGCTCGGACTCGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTACTTCGACACAGACGGCAGCGGGGGAGGGATGATGACGTCTCTGACGTCAGAGCCGCCGCCTTCGGGGTTTGCGGAAGCGGTAGCGTCCCCACTTGAGAGCCCTGCGGTAAAGAGGGGAAGAGGAAGGCCACGTGGTTCCGGAAAACTGCAGATTCTGGCCTCCATTGGTGGGTTTGTTGCAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGATGTGGTAAGTAGGATATTGTCATTTTTCCAAAAAGGCCCTCGTGCTGTTTGCATACTTTCAGCAACTGGTTCTGTGTCTAGTGTTGTGATTCGCCAACCTGGTGGTCTATTGAGATATGAGGGTAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTACATCAATGGCACTGGTAATGCATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCAGGGTTTTTGGTGGTGGCATTGAGAACTCTTTGATTGCTGCTGCCCCTATTCAACTTGTTTTGGCCACTTTCAAGCAACACATTAGCAACCAAATCAAGAAGAGGTACTCATCTGACCCTTCTTCTGATGGTGTCCCCTATGCTGCTGTGACAGGCGTTGCTGTCGAGCTGAATATTCCGGATTCCTCAAGGGGTAGCCATAAAGTTCTTAAGTTGTCATTGCAAGAACAAAGTTTCCCTTCACCACCAGGAAGAACAAAAGCAGTTCAAGATGGCGTCACAATTGTAACAACTAATGACATATCGGATAATGTGATTCCTACGACAACAAATGGGGTATCAAATAATGTCATTCATGAAGATCTCAACATGCATTCTTCTTCAATTGAGGATGCTATTGACCTTGACCAAACAACCTCACTAGCCGATGTGGATACTAATTAA 1125 0.4756 MEQQNPQQPSNPILDHTSSFNNNTIVPNEANVVAMPDSGGSDSVSRPEAGGWEQHHGVVVVKRGRGRPRKYFDTDGSGGGMMTSLTSEPPPSGFAEAVASPLESPAVKRGRGRPRGSGKLQILASIGGFVAETAGGSFTPHVMIVGTGEDVVSRILSFFQKGPRAVCILSATGSVSSVVIRQPGGLLRYEGRFEILSLSGSCTYINGTGNAYRKDGMLSVSLAKPDGRVFGGGIENSLIAAAPIQLVLATFKQHISNQIKKRYSSDPSSDGVPYAAVTGVAVELNIPDSSRGSHKVLKLSLQEQSFPSPPGRTKAVQDGVTIVTTNDISDNVIPTTTNGVSNNVIHEDLNMHSSSIEDAIDLDQTTSLADVDTN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0062 374 Pfam AT hook motif 62 73 IPR017956 GO:0003677
Ahy3g0062 374 Pfam AT hook motif 108 118 IPR017956 GO:0003677
Ahy3g0062 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 252 IPR005175 -
Ahy3g0062 374 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Ahy3g0062 374 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Ahy3g0062 374 MobiDBLite consensus disorder prediction 1 25 - -
Ahy3g0062 374 ProSiteProfiles PPC domain profile profile. 135 278 IPR005175 -
Ahy3g0062 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 256 - -
Ahy3g0062 374 Gene3D - 140 266 - -
Ahy3g0062 374 PANTHER DUF296 DOMAIN PROTEIN 23 324 - -
Ahy3g0062 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 324 IPR039605 GO:0003680
Ahy3g0062 374 CDD DUF296 139 251 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0062 Ahy-Chr3 561358 569509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0062 61 251 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 48.205 1.71e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0062 - - aip:107632385 659.448