Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0061 ATGGAGCAACAAAACCCTCAACAACCCTCTAACCCCATTTTGGACCACACTAGCTCTTTCAACAACAACACTATCGTGCCGAACGAAGCAAACGTGGTGGCGATGCCTGATTCTGGAGGCTCGGACTCGGTGTCAAGACCCGAAGCTGGAGGTTGGGAGCAGCATCATGGAGTGGTGGTTGTGAAGAGGGGGAGAGGGAGACCTCGAAAGTACTTCGACACAGATGGCAGCGGGGGAGGGATGATGACGTCTCTGACGTCAGAGCCACCGCCTTCGGGGTTTGCGGAAGCGGTAGCGTCCCCACTTGAGAGCCCTGCGGTAAAGAGGGGAAGAGGAAGGCCACGTGGTTCCGGAAAACTGCAGATTCTGGCCTCCATTGGTGGGTTTGTTGTAGAAACAGCTGGTGGAAGCTTCACACCTCATGTGATGATTGTTGGTACTGGAGAGGGTAGGTTTGAGATTTTATCTTTATCTGGATCATGCACCTACACCAATGGCAATGGTAATGCATATCGCAAAGATGGCATGTTGAGTGTTTCTCTTGCTAAACCTGATGGCAGGGTTTTTGGTGGTGGCATTGAGAACTCTTTGATTGCTGCTGCCCCTATTCAACTTGTTTTGGCCACTTTCAAGCAAAATATCAGCAACCAAATCAAGAAGAGGTACTCATCTGACCCTTCTTCTAATGGTGTCCCCTATACTGCTGCTGCCGCCATCGCTGTCGTGCCGGATATTCCGGATTCCTCAAGGGGTAGCCACAAAGTTCTTAAGTTATCATTACATGAACAGAGTTTCCCTTCACCACCACGAACAACAAATGCAATTCAAGATGGTGTCACAATTGTAACAACTAATGACATAGCAGATAATGTGATTCCTACAACAACAAATGTGGTGACAAATAATGTCATTGCTGAAGATCTCAACATGCATTCTTCCTCAATCGAGGATGCTATTGACCTTGACCAAACAGCCTCACCAGCAGATGTGGATACTAATTAA 1002 0.48 MEQQNPQQPSNPILDHTSSFNNNTIVPNEANVVAMPDSGGSDSVSRPEAGGWEQHHGVVVVKRGRGRPRKYFDTDGSGGGMMTSLTSEPPPSGFAEAVASPLESPAVKRGRGRPRGSGKLQILASIGGFVVETAGGSFTPHVMIVGTGEGRFEILSLSGSCTYTNGNGNAYRKDGMLSVSLAKPDGRVFGGGIENSLIAAAPIQLVLATFKQNISNQIKKRYSSDPSSNGVPYTAAAAIAVVPDIPDSSRGSHKVLKLSLHEQSFPSPPRTTNAIQDGVTIVTTNDIADNVIPTTTNVVTNNVIAEDLNMHSSSIEDAIDLDQTASPADVDTN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0061 333 MobiDBLite consensus disorder prediction 1 24 - -
Ahy3g0061 333 PANTHER DUF296 DOMAIN PROTEIN 23 149 - -
Ahy3g0061 333 CDD DUF296 149 210 IPR005175 -
Ahy3g0061 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 211 IPR005175 -
Ahy3g0061 333 ProSiteProfiles PPC domain profile profile. 79 236 IPR005175 -
Ahy3g0061 333 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Ahy3g0061 333 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Ahy3g0061 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 23 149 IPR039605 GO:0003680
Ahy3g0061 333 PANTHER DUF296 DOMAIN PROTEIN 149 285 - -
Ahy3g0061 333 Gene3D - 118 225 - -
Ahy3g0061 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 149 285 IPR039605 GO:0003680
Ahy3g0061 333 Pfam AT hook motif 108 118 IPR017956 GO:0003677
Ahy3g0061 333 Pfam AT hook motif 62 73 IPR017956 GO:0003677
Ahy3g0061 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0061 Ahy-Chr3 546425 554987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0061 61 221 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 38.647 1.47e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0061 - - aip:107632385 567