Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0048 ATGAATAACAGAGACAGTGAAACTTCAAACCCTATCGATGGCGGAACAAAGAAGCCCAAGGTGGTTGTTATTACGGGCCCCACCGCCTCCGGCAAGTCCAAGCTCGCCGTCGATCTCGCTTCACACTTTCCCATTGAAGTCATCAACGCCGACTCCATGCAAGTCTACTGTGGTCTCGACGTCCTCACCAACAAGCTCCCTCTCTCCCAACACAAAGGGGTGCCGCACCATCTCTTAGGTACCGTAAATCCAAACGTTGAATTTACAGCTAAAGTGTTTAGGGATTCTGCTATTCCGATCATAGATGAAATACTAGCTCGCAATCACTTGCCTGTGATAGTTGGGGGTACAAATTACTATATCCAGGCTCTTGTGAGTCCATTTCTCCTAGACGATTTGGCAGATGATATGAACGAAGGCTGTTCTGATGATCCATCTGGTGCCACATGGTCTGATACGAGTTTCCCCGCCAATAATGACAATTCAAGTAATGGTTATGACCTGCTTAAAGAGATCGATCCAGTTGCCGCAAATAGAATCCATCCAAATAACCATAGAAAGATCAATCAATATATTAATTTGTATTCACGTACTGGTGTTGTTCCTAGCAAAGTATTCCAAGGAAAAGCAGCAGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTGCTGGACAAATATGTTGAGCAGAGGGTAGACTGTATGTTGGATGCTGGATTACTCAATGAAGTCTATGATGTTTACAACGTGAATGCAGATTATACTAGAGGATTGCGGCAAGCCATTGGTGTCCGAGAATTTGAGCCACTTCTTAGAAGTTGCCTTGTTGAAGACATCTATAAAAGAGAGAAGGAACTGTTAAACGGTTCCAGAATAGAAAAGGGTTTGAAATTGTTTGATGGTAACCTGATGGAGTGGTTGAAATCTTCCTCTGATACTAATACCATAATTCTTTTAGAAGAAGCAATAGAAAAAGTGAAGGTTAATACCCGGAGACTTGTTCGACGACAGAAGAGGATGCTCAATAGGCTGCAAACACTATTTGGTTGGAACATACATTTTGTTGATTCCACAGAGTCAATATCAAGCAAATCAGAGGATGTATGGTCTGACCAAGTGGTTGAGTCAGCTACAAAGGTAGTTAGTTCCTTCTTGTGTGAGAATGGAAGCTTGTCATCCACTTGTGGCATGTCAAATGACACCAACGTGAAAATTAATCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGTGGAGACAGGGTGCTAAGAGGATTACATGAATGGGAACAACACAAAAAGGGTCGTGGCCACAGGAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAAAGTCTTGGTACCTTGGACAAAATGTTTGA 1419 0.4271 MNNRDSETSNPIDGGTKKPKVVVITGPTASGKSKLAVDLASHFPIEVINADSMQVYCGLDVLTNKLPLSQHKGVPHHLLGTVNPNVEFTAKVFRDSAIPIIDEILARNHLPVIVGGTNYYIQALVSPFLLDDLADDMNEGCSDDPSGATWSDTSFPANNDNSSNGYDLLKEIDPVAANRIHPNNHRKINQYINLYSRTGVVPSKVFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDKYVEQRVDCMLDAGLLNEVYDVYNVNADYTRGLRQAIGVREFEPLLRSCLVEDIYKREKELLNGSRIEKGLKLFDGNLMEWLKSSSDTNTIILLEEAIEKVKVNTRRLVRRQKRMLNRLQTLFGWNIHFVDSTESISSKSEDVWSDQVVESATKVVSSFLCENGSLSSTCGMSNDTNVKINQRDLWTQYICKACGDRVLRGLHEWEQHKKGRGHRKRISSLKSKAQKSWYLGQNV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0048 472 Pfam IPP transferase 54 351 - -
Ahy3g0048 472 Hamap tRNA dimethylallyltransferase [miaA]. 21 394 IPR018022 GO:0008033
Ahy3g0048 472 Gene3D Classic Zinc Finger 423 467 - -
Ahy3g0048 472 MobiDBLite consensus disorder prediction 1 20 - -
Ahy3g0048 472 Gene3D - 156 209 - -
Ahy3g0048 472 CDD NK 21 73 - -
Ahy3g0048 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 264 IPR027417 -
Ahy3g0048 472 TIGRFAM miaA: tRNA dimethylallyltransferase 21 287 IPR018022 GO:0008033
Ahy3g0048 472 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 400 - -
Ahy3g0048 472 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 400 IPR039657 -
Ahy3g0048 472 Gene3D - 19 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0048 Ahy-Chr3 444529 448105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0048 10 460 C2H2 Transcription Factor Family AT2G27760 56.522 8.46e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0048 K00791 - gmx:100792690 729.554