Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0043 ATGAACGGCGATGCCCGGAGACGCGACCGGAGGGACAACCCCAGGAGGTCGAAGAAGCAGAAGCTGATTTGCAGTGCAGAGGAAGAACTTGAGGCCAGATTAGGGTTCGATCTCTTCTCTGAGGGCGAAAAGCGTCTTGGATGGTTGCTCAATTTTGCATCTTCTTCTTGTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGATCTTCCTTCAAGACTAAATACAGATTTCGTCCTTATTTCTACGCAGCTACAAAGAATAAAATGGAGATGGATGTTGAAGCATACCTGAGGCGCCGTTATGAAACTCAGATTGCAGACATTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAATCATTTGTCTGGCTTAAGAAAACCTTATCTAAAGCTATCATTTGATACCGTGCAACAATTGATGACTGTAAAGAGTGACCTGATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTGACTGAAAGAAGAGAACAAAAACCACAGGACTTTATAGATTGCATAATTGATCTCCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGCTCTGGCCAGTGGTATGATGTTTGCGTGTCCAGTACTGGGGTTACACTTGAGAAGAGAACAGATCTTCTGCAGCGCGCCGAAGTTCGTGTTTGTGCATTTGACATTGAGACCACAAAACTTCCACTCAAATTTCCTGACGCTGACTATGATTTGATTATGATGATTTCATACATGGTAGATGGGCAAGGGTATTTAATCACAAATAGAGAGTGTGTTGGTGATGACATAGAGGATTTAGAGTACACTCCTAAACCAGAGTTTGAAGGCTGTTTTAAGGTTACAAATGTTCAAAATGAGATTGAACTTCTTAGATTATGGTTTTCTCACATGCAAGAGATGAAACCTGGTATTTATGTGACGTATAATGGTGATTTTTTTGATTGGCCATTCCTTGAGAAAAGGGCAGAACATCATGGGTTCAAAATGAGTGAGGAATTGGGGTTTCAGTGTGACAAGAATCAAGGGGAATGTCGTGCTAAATATGCTTGTCATTTAGATTGTTTTGCTTGGGTTAAACGGGACAGTTATCTCCCTCAAGGAAGCCAAGGCCTAAAGGCGGTTACAAAAGCAAAGTTGGGTTATGATCCCTTGGAGGTGAACCCTGAGGATATGGTTTGCTTTGCAAAGGAAAAGCCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATCTCCTAACAAACACCAATCCGACCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGGTCTGATATTCCAACTAGTTTTACACTAGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGAATGCCATCATGGAAAAGCTTTCAAAATTACGAGATGTTCCAATACGTGAAGAATGCCCCCTCATTTATCATCTAGATGTAGCTGCTATGTATCCAAACATAATTTTGACAAATCGACTTCAGCCGCCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATATAAAGAAACAGATTGAGTCCGATTTTGTTGATGGTTCTAACGTGAGGTTATCAAAATCTTTTCTTGACCTGCCCAAGGCAGAGCAACAATCAAGGCTGAAAGACCGTTTAAAGAAATACTGCCAGAAGGCATACAAGCGTGTTCTTAACAAACCAGTTACAGAACTCCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGATAGAAGATATGAATATAAAGGTCTTAACAAGGTTTGGAAAGGAAAACTGTCAGAAGCCAAGGGGAGTGGAAATCCTATGAAGATCCAGGAAGCACAAGACATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTTATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACAGGAGCAAAAATAATTCAGAATGCCCGGTTGCTGGTAGAAAAAATAGGGAAACCACTTGAACTAGATACTGATGGTATCTGGTGTGCACTTCCTGGGTCTTTTCCAGAAAATTTTACTTTTAAAACAAAAGATTCGAAAAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTAAATGTTGATGTGGCAATCAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATAAGGAAAACATATACTACTCGTAGCGAATGCTCTATAGAATTTGAGGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAAGAAGAAGGAATTTTAATTAAAAAACGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGAAGAGGTGAACTGAAACTAATAAAAGTTTTCCAGGCTGAGCTATTTGACAAGTTTCTCCATGGCTCAACCTTAGATGAATGCTATTCAGCTGTTGCTGCTGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGGAAGGATATTACAGACAGTGAGTTGCTTGATTACATCTCAGAATCAAGTACCATGAGCAAGTCATTAGCTGATTATGGTGAGCAAAAATCTTGTGCTGTCACCACTGCCAAACGTCTTGCCGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACAAAAGCTGAAGTAATGAAGTACTATGTTCGAAGATGGTGCAAGGCCTCATCAGATGTTGGCATTCGGTCCATAGTTGACTGGTCCTACTACAAGCAGCGGCTTTCTTCAGCGATTCAAAAAATTGTCACAATTCCCGCTGCCATGCAAAAGATTGCAAATCCTGTTCCTCGGGTAGCTCATCCGGATTGGTTGCATAAGAAAGTTCGTGAAAAAGAGGACAAGTTTCGTCAACGAAAATTAGTTGATGTCTTTAACTCATTTAAAAGGGATGATCGCTCAAAAAGGAATAGTGATTCTAATGGTGTCAGCCTTATGGCTGATGAAGAGAATGTGATTGACTTGGAGGATTTTGGAAACAAGGCCAGGAATTTGCCAATTGGTCCTAGACCAATTATACGGCATTATAAAGCTAATAATGAAGGGAATTCAATTAAGCTCAGTGGTCATGGAAATTCTGAGCAACAACATATTGATAATAGCAGCAAGGACGAGTCACTTTCACTTTTTCAACAAAAGGAAATATCATCTGAAAATGTTGACAGAAATGTTGATTATCAAGGATGGCTTGAAATAAAAAAGAGAAAGTGGAAAAGTATCCTGGAAAGAGAAAAAAGCGAAGATCAAGCACCAGAAGTCAATGATGGATTGTTTGGATCTTCTACCAAAAATGATTTGTTTTCTGTGTTGGGTTCATTGATGTTACCCACCACTATGATTGTGACAGTTAACTACGACAGCACAAATGAATGCCCAAAAGGGGTCACAGCCAAATTGTGGAGATTGGAGAATTCAAAGAAAGCTGATAGGATGAATGGTGTTCCTGAACAAATGAATGGTACAACTGGTAGAACAAATGTCAGTTCATATTTTAGAACGAATGAAGTAGCCCTGAAGCGGTACCATTGGCAGATAATACAACTACTTCAGAGCTCACAGATTGGCCAATTTTTTGCCTGGGTAGTTGTTGATGGGATTATGCTAAAGATTCCTGTTTCGGTTCCTAGAGTCTTTTACCTCAACTCAAGATCACCAGTTACTGAAGAATTTCTTGGCAAAAGCGTCAAGAAGACACTTCCTCATGGAAAGCAAAGTTATAATCTGTATGAGGTTTCAATTGACGAAGTTCAATTTAAGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCACTGGAGTTTAATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGATAAAAGTGCCAAACAAAGAAGTCTACAAGACTCATGGAATTTGAGTGAATTGCACATGAAGACCACAACCGAATGTTCTTATCTCGAACAATTGATATCCTTTTTTTACTTGTATCATAGTATCTCTGAGGGACGGGCTATATACGTTGGATATTTTCCAGCATCAAAATCAATAACAGTTGTGGTAGTTAATTCATATCAAAACAAGGATTTATCACTGGCTTATCTTGAAAGACAGTTTCACGATGCATGCCAAGCTTTGTCTATTCAGCCACCTCCCCGGAATAGCATTAGTTTTAAGGTGGACTATGTTTCACATGTCAAGGATGCTGAAACTTTGATGCAAAGAGCAATAAATGATCGCAGGAATGAATATCATGGACCTATGGTTGCTATCATCGAATGCCCAAATGTTCAACTTTTGAAATTGGGTATTCGATCGCTAGATGATTTTCCATGCCTGAGTATTCCTTGTAATGCCCGTGATAGTCAATATCAGATTCTTGGATGGCAACAAGTTGCTGGAAAAATTGGAATGCAACGTTGTGCTGCATCAGGCCAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTTGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGCGTGATAGTCAACAGGTACTTTGGATATCGGATGGCGGTCTTCCTGATTTAGGTGGCATTAATGATGAAGAGACCTGTTTTCTTGACGAGGTAGTCCACCAACCTGTTCTTACATATCCTGGAGCTTACAGAAAAGTTACTGTTGAGTTAAAGATACACCACCTAGCTGTGGATGCCCTTTTAAAAAGCAACCAAGTCAATGAAATGGAAGGAGGCGCTTTATTAGGATTCGATAATGAATTTAATTCTGGAGCTAATCCCGCTATTGATCAGAGTGGCTTTGATGAGGCTGCCTCATGTACACATGCCTTTCGAGTCCTGAAACAATTGATTCAGCGGTGCCTTGCAGATGCAGTTACATCTCAAAACACATATGCGGATGCAATGTTGCAACATCTGTATCGATGGCTTTGCAGCCCTCAGTCAAAACTTCACGATCCAGCTCTTCACCAGCTACTTCACAAGGTCATGCAAAAAGTGTTTGCACTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTATTTGCAAACTTCTCAAAGATTATTATCGACACAGGGAAATATGATCTTGCTGCAGCCAAGGCTTACTGTGACAGTTTGTTAAGAACTATACAGTCTAGAGACTTATTTGAATGGATTGAGTTGGAACCACTTCAGTTTTGGCGGTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATCAGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAGTACTTGCCAAAGAAAATCCAGGATCATTTCATTGTCATTGTTTCTCAATTCTTGTATATTCCTTGGAGCTATGCACAAAAGCAAGCAGGAATCAGGGAATCAATGCTGAATGGTGATTCCTGCACCCCATCGATTAACATTGGAGCTGCAGAGGCTTTGGAATCAGAAATGATAGAATATATCAAAGAACAGATTAGCTCTTACTTCACGGACAATCTTTTGCGAATTGTTCGTGATATTGTTCTTCACATGAAAGGGGCAAGCAAATCAGAAGATGACCCAAGTACATCATCTGGCCTTCCTCAAATTGTGGGTGATCAACATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTCTGTGCTGTGTTGGCCCTCGACCAAAGTGTGCAGCATGATGTGTTGGTCATGAGAAAGAATTTGTTAAAATATGTTCGTGTTAGGGAGTTTGCTCCGGAAGCTGAGTTTCGTGATCCATGTCATTCCTTCATCCTATCCAATGTCATTTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGCCGTGACTCGGCTTTATTGACTCAGGAGTGGCGTTGTGCGGTGCCACAGTGTGGCCAGCCTTATGACCGCGAGGTGATGGAGAATGCGCTTCTTCAGATCGTACGACAAAGAGAGCGGCTTTACCACCTTCAAGATCTGGTGTGCCTCAGGTGCAACCAGGTCAAAGCTGCACATTTGTCTGAGCAGTGTGCTTGTGCTGGCTCATTTAGGTGCAAGGAGATTACTGAATTTCGCTCAAAGATGCAGGTTTTCTTCAACATAGCTTTTCGTCAGAAATTCCAACTTCTCCAGGAATGTACCTCTTGGATTTTAGAACTTAGATTGTAA 6783 0.4059 MNGDARRRDRRDNPRRSKKQKLICSAEEELEARLGFDLFSEGEKRLGWLLNFASSSCEDEETHKVYSCVDLYFVTQDGSSFKTKYRFRPYFYAATKNKMEMDVEAYLRRRYETQIADIEIIEKEDLDLKNHLSGLRKPYLKLSFDTVQQLMTVKSDLMHVVERNQAKSDAAEAYESILTERREQKPQDFIDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVCVSSTGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLITNRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEMKPGIYVTYNGDFFDWPFLEKRAEHHGFKMSEELGFQCDKNQGECRAKYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVISPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKNAIMEKLSKLRDVPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHIKKQIESDFVDGSNVRLSKSFLDLPKAEQQSRLKDRLKKYCQKAYKRVLNKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKGSGNPMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLDECYSAVAAVANRWLDLLDNQGKDITDSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETKAEVMKYYVRRWCKASSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAAMQKIANPVPRVAHPDWLHKKVREKEDKFRQRKLVDVFNSFKRDDRSKRNSDSNGVSLMADEENVIDLEDFGNKARNLPIGPRPIIRHYKANNEGNSIKLSGHGNSEQQHIDNSSKDESLSLFQQKEISSENVDRNVDYQGWLEIKKRKWKSILEREKSEDQAPEVNDGLFGSSTKNDLFSVLGSLMLPTTMIVTVNYDSTNECPKGVTAKLWRLENSKKADRMNGVPEQMNGTTGRTNVSSYFRTNEVALKRYHWQIIQLLQSSQIGQFFAWVVVDGIMLKIPVSVPRVFYLNSRSPVTEEFLGKSVKKTLPHGKQSYNLYEVSIDEVQFKEASKKLAALLADPDVEGIYETKVPLEFNAIVQLGCVCKVDKSAKQRSLQDSWNLSELHMKTTTECSYLEQLISFFYLYHSISEGRAIYVGYFPASKSITVVVVNSYQNKDLSLAYLERQFHDACQALSIQPPPRNSISFKVDYVSHVKDAETLMQRAINDRRNEYHGPMVAIIECPNVQLLKLGIRSLDDFPCLSIPCNARDSQYQILGWQQVAGKIGMQRCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALRDSQQVLWISDGGLPDLGGINDEETCFLDEVVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGALLGFDNEFNSGANPAIDQSGFDEAASCTHAFRVLKQLIQRCLADAVTSQNTYADAMLQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLAAAKAYCDSLLRTIQSRDLFEWIELEPLQFWRSLLFMDQYNYGGIPAKSDESQVDIISSWNIAEYLPKKIQDHFIVIVSQFLYIPWSYAQKQAGIRESMLNGDSCTPSINIGAAEALESEMIEYIKEQISSYFTDNLLRIVRDIVLHMKGASKSEDDPSTSSGLPQIVGDQHRGDASLEFIKHVCAVLALDQSVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTQEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLSEQCACAGSFRCKEITEFRSKMQVFFNIAFRQKFQLLQECTSWILELRL* 2261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0043 2260 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 34 2256 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Ahy3g0043 2260 Gene3D Palm domain of DNA polymerase 753 938 IPR023211 -
Ahy3g0043 2260 MobiDBLite consensus disorder prediction 1 20 - -
Ahy3g0043 2260 MobiDBLite consensus disorder prediction 1215 1237 - -
Ahy3g0043 2260 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Ahy3g0043 2260 Pfam DNA polymerase family B 762 1067 IPR006134 GO:0000166|GO:0003677
Ahy3g0043 2260 SUPERFAMILY DNA/RNA polymerases 487 1115 IPR043502 -
Ahy3g0043 2260 Gene3D - 239 469 IPR036397 GO:0003676
Ahy3g0043 2260 CDD DNA_polB_epsilon_exo 241 444 - -
Ahy3g0043 2260 CDD POLBc_epsilon 504 1123 - -
Ahy3g0043 2260 Gene3D DNA Polymerase, chain B, domain 1 56 232 - -
Ahy3g0043 2260 SMART DUF1744_2 1566 1951 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Ahy3g0043 2260 Pfam Domain of unknown function (DUF1744) 1584 1951 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Ahy3g0043 2260 Pfam DNA polymerase family B, exonuclease domain 75 401 IPR006133 -
Ahy3g0043 2260 SUPERFAMILY Ribonuclease H-like 65 468 IPR012337 -
Ahy3g0043 2260 Gene3D - 942 1126 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0043 Ahy-Chr3 406359 427489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0043 5 2256 Core DNA Replication Machinery Family AT2G27120 66.711 0.0 3038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0043 K02324 - gmx:100812003 3706.38