Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0036 ATGTATAGTAATTTCAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCGGTGCAGGAGGACAACAATGGCAACTACGCCAAGGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATCACGCAGAAATTCACCGAGTACCTTCGTCGTGCCGAGGAGATCCGTGCTGTTCTTGACGACGGTGGGACTGGGCCTGCCTCCAACGGGGACGCGGCCGTTGCCACCAGGCCCAAGACCAAGCCCAAGGACGGAGAAGGAGGCAGCGGAGGTGGGGACGGGGAGGATCCCGAGCAGGCCAAGCTGAGGGCGGGTTTGAACTCTGCCATCATTAGGGAGAAGCCTAACGTCAAGTGGAATGACGTGGCGGGTTTGGAGAGCGCCAAGCAGGCGTTGCAGGAGGCGGTTATCTTGCCCGTTAAGTTTCCTCAATTCTTCACTGGTAAAAGACGGCCTTGGAGAGCTTTTTTGTTGTACGGACCCCCCGGAACTGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCTACATTTTTCAGTGTTTCTTCATCGGACTTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAATCTTTTCCAAATGGCCCGGGATAGTGCACCTTCTATCATATTTGTTGATGAAATAGATTCGCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGTATTAAAACTGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACGAATACACCTTATGCTCTTGACCAGGCCATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTGAAAGCCCGCCAACACATGTTCAAGGTGCATCTAGGAGATACACCTCATAACTTGACCGAGAGTGATTTTGAACACTTGGCACGCAAGACAGAGGGATTTTCAGGTTCAGATATATCTGTTTGTGTGAAGGATGTTTTATTTGAACCCGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGGATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAATACAAATCACAATGCAAGACCTTGCCGCAAAAGGACTTGCTGCTAAGATCCTTCCGCCACCTATATCGAGAACAGATTTTGACAAGGTGCTTGCTAGACAAAGGCCTACTGTAAGCAAAGCTGATCTCGACGTACATGAGAGATTCACAAAGGAGTTTGGAGAGGAGGGTTAA 1314 0.4855 MYSNFKEQAIEYVKQAVQEDNNGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGTGPASNGDAAVATRPKTKPKDGEGGSGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDSAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKDPEGMWIPCGPKQQGAIQITMQDLAAKGLAAKILPPPISRTDFDKVLARQRPTVSKADLDVHERFTKEFGEEG* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0036 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Ahy3g0036 437 CDD MIT_VPS4 4 78 IPR045253 -
Ahy3g0036 437 Gene3D - 302 417 - -
Ahy3g0036 437 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Ahy3g0036 437 SUPERFAMILY MIT domain 2 82 IPR036181 -
Ahy3g0036 437 PANTHER AAA DOMAIN-CONTAINING 1 437 - -
Ahy3g0036 437 CDD AAA 137 300 - -
Ahy3g0036 437 Gene3D - 129 425 IPR027417 -
Ahy3g0036 437 Gene3D - 6 75 - -
Ahy3g0036 437 SMART smart 2 79 IPR007330 -
Ahy3g0036 437 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 437 - -
Ahy3g0036 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Ahy3g0036 437 MobiDBLite consensus disorder prediction 91 113 - -
Ahy3g0036 437 SMART AAA_5 166 302 IPR003593 -
Ahy3g0036 437 MobiDBLite consensus disorder prediction 74 113 - -
Ahy3g0036 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Ahy3g0036 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0036 Ahy-Chr3 315325 319095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0036 165 358 Calmodulin-binding Proteins AT3G56690 36.735 1.26e-35 138