Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0014 ATGCCACGGGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCATCCGAGCCTGAAAATCCAGCTGAATCTGATGAAAAGATCGATTTTGATGATGCAAATGATGCTGAGGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTGGAAGAAATAGAAGAGGTGGAAGAAGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAGAGGAGGAAGAGGATCCGGAGGAGGTTGAGGTGGTGGAGGAGGAAAAGGAGGAAGAGGATCCGGAGGAGGTGGAAGAGGTTGAAGAAATGGAAGAAGATAATAGCATGCAAAACAGTAGCAAGGCAGAAGATAAGGATGAGAAGAAAAAGCATGCTGATCTTCTATCTCTTCCTCCTCATGGGTCTGAAGTATATATTGGTGATATTCCACTTGATGCCTCGACTGAGGATTTGAAAGCATTTTGTGAGTCTATTGGGGAAGTTGCAGAGGTTCGTGTAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGATTTGGTTTTGTGACATTTAAAAGTGTGGAATTGGCTTCTAAAGCCATCAAGGAGCTGAACAGTAAAGCATTTAAGGGTAGAAAAATAAAATGTTCAACTGCTCAAGCAAAACACCGTCTTTTTATTGGCAATGTTCCCAGAAACTGGGGTGATGAAGATCTCAGGAAGGTTGTATCTGATGTTGCACCTGGAGTTACTGGTTTAGAACTAGTCAAGGATATGAAGAACACTAAAAATAACCGTGGATTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGACAAAAGATGATGAGCTCAACATTTAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAGGGCAGTATATGTGAAGAACTTGCCTAGGAATGTAACTCAGGAGCAGATGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGGCAGGAAAAGAATAGAATAGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAAGCACTAAAAAACACTGAAAGATATGAATTAGAAGGTCAAATTTTGAACTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTTGCAGAAGCCAGGATTGCTTCCAAGCTATTCCCCACATGTTGGTTACGGTTTGGTTGGTGCCCTTGGCGCGGGATATGGTTCCCCAGGTTTTGCACAGATGCCCTCAATGTATGGAAGGGGTGCTCCTGCTGAAATTTCCATGATGCCTATGCTTCTGGCCGACGGTCGGATTGGATATGTCTTGCAACAACCAGGTCGGGGAGTGCACTCACGAACACCACCCTTCTTTCAGAGAGGTGGCTGGGGTGGTGGTGGTGGGAGTAGCAGCAGGAATGCTAGCAGTTCAAGTAAAGGAAGGCACAATAATAATAGTAGCCAGGGGCATAGATACCGCCCATATTAG 1545 0.4395 MPRGKANSSSVAKPSEPENPAESDEKIDFDDANDAEETMEEEIEYEEVEEEEEVEEIEEVEEEEEDPEEVEVVEEEEEEEDPEEVEVVEEEKEEEDPEEVEEVEEMEEDNSMQNSSKAEDKDEKKKHADLLSLPPHGSEVYIGDIPLDASTEDLKAFCESIGEVAEVRVMKGKDSSENKGFGFVTFKSVELASKAIKELNSKAFKGRKIKCSTAQAKHRLFIGNVPRNWGDEDLRKVVSDVAPGVTGLELVKDMKNTKNNRGFAFIDYYNHACAEYSRQKMMSSTFKLGDNAPTVSWADPKNADSSASSQVRAVYVKNLPRNVTQEQMKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQILNCSLAKPQADQKSGGSNLQKPGLLPSYSPHVGYGLVGALGAGYGSPGFAQMPSMYGRGAPAEISMMPMLLADGRIGYVLQQPGRGVHSRTPPFFQRGGWGGGGGSSSRNASSSSKGRHNNNSSQGHRYRPY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0014 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 300 IPR000504 GO:0003723
Ahy3g0014 514 MobiDBLite consensus disorder prediction 110 132 - -
Ahy3g0014 514 Coils Coil 38 66 - -
Ahy3g0014 514 MobiDBLite consensus disorder prediction 1 138 - -
Ahy3g0014 514 Gene3D - 300 406 IPR012677 -
Ahy3g0014 514 SMART rrm2_1 313 386 IPR003954 GO:0003676
Ahy3g0014 514 SMART rrm2_1 139 212 IPR003954 GO:0003676
Ahy3g0014 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 390 IPR000504 GO:0003723
Ahy3g0014 514 PANTHER RNA RECOGNITION MOTIF 68 480 - -
Ahy3g0014 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 70 - -
Ahy3g0014 514 Gene3D - 68 218 IPR012677 -
Ahy3g0014 514 SUPERFAMILY RNA-binding domain, RBD 305 411 IPR035979 GO:0003676
Ahy3g0014 514 SMART rrm1_1 219 296 IPR000504 GO:0003723
Ahy3g0014 514 SMART rrm1_1 139 212 IPR000504 GO:0003723
Ahy3g0014 514 SMART rrm1_1 313 386 IPR000504 GO:0003723
Ahy3g0014 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Ahy3g0014 514 MobiDBLite consensus disorder prediction 485 514 - -
Ahy3g0014 514 CDD RRM_SF 140 212 - -
Ahy3g0014 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Ahy3g0014 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Ahy3g0014 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Ahy3g0014 514 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 68 480 - -
Ahy3g0014 514 SUPERFAMILY RNA-binding domain, RBD 135 304 IPR035979 GO:0003676
Ahy3g0014 514 MobiDBLite consensus disorder prediction 468 514 - -
Ahy3g0014 514 MobiDBLite consensus disorder prediction 23 109 - -
Ahy3g0014 514 Gene3D - 219 299 IPR012677 -
Ahy3g0014 514 PANTHER RNA RECOGNITION MOTIF 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0014 Ahy-Chr3 170800 175486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0014 140 481 Eukaryotic Initiation Factors Gene Family AT4G34110 24.211 9.52e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0014 K13161 - gmx:100806658 616.305