Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g0002 ATGTCGGGCACCAGAGCTCCTCCCGCCGCTGCTAGCCCATCGGAGCAGATCATGCGGCGCCAACTTCCCCTCTCCACCATGAAGCCGCCCTTTGCCGCCTCCGTTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAACCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTCCCAATTGAAGCGGAAGAGTAACACAACAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCATGTATCCATGGGAGCAGCTAATAATCCTTTTCAGACCCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACCAAATGCAACAGATCTGGACCTCAAACCCCAGGTCCAAATATTGCAGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAGCAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAGAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAGTTTACAGGCAGAAGTTGAAAACCTTACCATGAAGGAGTGCCGGTTAGATGGACAAATAAGGGAGATGCAAGAAAGACTAAGTGACCTTAGTGAAAATGAAAATAGTGAAAAATTGCTTTTCGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATTGCAATTAAAGCTCCACATGGCACCACTCTGGAGGTTTCAGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACCATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCGAATTTCAACCGACTCCAGAATTTAAAAACCATGAACCAACTGTGGTTGTAGAGGATAACGGGAGAGACATTGCAGTGCAGGGACAAGATGGTCAAATACCTAGTTCTGATTTTACTTCTACACAAGACTTTCTGAGTGGGATCGTGAAAATTGTTCCTTCAGATGTTGATAGCCATGCTGACTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGTGTCCAATGGAATGAACTGGGTACTCTTCAGGATGATTTTTGTACAACTCGCGAGCATGCTATAACTCTAACACATACTTCGAATGTAAATGAAGCATCTACTGCAGCATCAAACCCTGCTGGGGGCTGA 1392 0.4447 MSGTRAPPAAASPSEQIMRRQLPLSTMKPPFAASVDYHRFAPDHLHHNRRTVDHEPEAIVVKSSQLKRKSNTTDFEADSGDRVNHVSMGAANNPFQTPKSGKIGKGGKSSRLTKCNRSGPQTPGPNIAGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSSLQAEVENLTMKECRLDGQIREMQERLSDLSENENSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVSDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPEFQPTPEFKNHEPTVVVEDNGRDIAVQGQDGQIPSSDFTSTQDFLSGIVKIVPSDVDSHADYWLLSDADVSITDMWRTESGVQWNELGTLQDDFCTTREHAITLTHTSNVNEASTAASNPAGG* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g0002 463 Gene3D - 138 210 IPR036388 -
Ahy3g0002 463 MobiDBLite consensus disorder prediction 111 134 - -
Ahy3g0002 463 Coils Coil 159 179 - -
Ahy3g0002 463 MobiDBLite consensus disorder prediction 88 134 - -
Ahy3g0002 463 PANTHER TRANSCRIPTION FACTOR E2FB 16 442 - -
Ahy3g0002 463 PANTHER TRANSCRIPTION FACTOR E2F 16 442 IPR015633 GO:0000978|GO:0006357
Ahy3g0002 463 CDD E2F_DD 219 325 IPR032198 GO:0046983
Ahy3g0002 463 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Ahy3g0002 463 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
Ahy3g0002 463 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Ahy3g0002 463 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Ahy3g0002 463 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Ahy3g0002 463 Gene3D - 216 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g0002 Ahy-Chr3 36374 41569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g0002 19 462 E2F-DP Transcription Factor Family AT5G22220 55.437 1.25e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ahy3g0002 E2F_CC-MB 4.00E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g0002 K06620 - gmx:100819817 679.863