Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2671 ATGGGTAACATAGGAAGTAGTAGTGCCAGCAACCGCAGAAGACACGGTGGTGGCGGTGGCGGAAGTGGACGGAGGATCCATCCTCCACCTCTTCCTCCGCCGCCGGTGACGCCACAGCCGGAAATCACAGCCAATCGGTTCGTGTACCCTGCTGCTGCGACTCCATATCATAACTATCCCGGTTATTATCCGCCGCCGGTGCCTTTGCCGGCACCCTATGACCACCACCACCGGCCCGCGGCGGTGGAGCCGATGTGGGGGCGGTATCCTCCGCCGGCAGCGCCTATGCCTCCGACGCCGTATGTGGAGCACCAGAAGGCGGTTACTATAAAAAATGATGTGAACATCAAGAAGGAAACTTTGAGGATTGAAGCTGATGAAGAGAACCCTGGGAAGTTCCTTGTTTCATTCACATTTGACGCCACCGTTTCTGGGAGCATTACTATACTTTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTTACTCCAATGAAGGAAGATTCTCTTCCACCTGTGACTGTACATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGGCAGCCAGCTGGAACTGGTATTGATTTTTTGCAATTTGAGGAGTCCGAGTTATTGAAAGTGGGAGAGATGGATATCTATCCTCTAGTAGTTAAGGCAGATGCAATGTTGGGCGATCATGACGGATCAAATGAGACTCCAAAGCATGGATCAAATGAAACTCGAAATGAAGGATCTAATGAAACTCCAAATGACGGACCTAATGAAACTCCAGTAACAGGTATTACAAACTCGCAGATAACAAAAGCAGTGTTTGAGAAGGAGAAAGGGGAATTCCAGGTGAAGGTTGTCAAGCAGATCTTGTGGGTGAATGGATTGAGGTATGAGCTGCAGGAGATATATGGCATTGGAAATTCAGTGGAGAGTGAAGTGGATGGAAATGACCCAGGAAAAGAATGTGTTATTTGTCTGTCAGAGCCCAGGGATACGACTGTCCTTCCTTGCCGTCACATGTGCATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGGTGTCCAATCTGCAGACAGCCAGTTGAGAGGCTTCTGGAGATCAAGGTTGGGGCAGAAGCCGAACCTCAGGAGTGA 1128 0.4947 MGNIGSSSASNRRRHGGGGGGSGRRIHPPPLPPPPVTPQPEITANRFVYPAAATPYHNYPGYYPPPVPLPAPYDHHHRPAAVEPMWGRYPPPAAPMPPTPYVEHQKAVTIKNDVNIKKETLRIEADEENPGKFLVSFTFDATVSGSITILFFAKEGEGCILTPMKEDSLPPVTVHFQQGLGQKFRQPAGTGIDFLQFEESELLKVGEMDIYPLVVKADAMLGDHDGSNETPKHGSNETRNEGSNETPNDGPNETPVTGITNSQITKAVFEKEKGEFQVKVVKQILWVNGLRYELQEIYGIGNSVESEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGAEAEPQE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2671 375 MobiDBLite consensus disorder prediction 240 260 - -
Ahy2g2671 375 SMART ring_2 317 355 IPR001841 -
Ahy2g2671 375 ProSiteProfiles Zinc finger RING-type profile. 317 356 IPR001841 -
Ahy2g2671 375 MobiDBLite consensus disorder prediction 222 260 - -
Ahy2g2671 375 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 316 356 IPR045195 -
Ahy2g2671 375 Pfam Zinc finger, C3HC4 type (RING finger) 315 361 - -
Ahy2g2671 375 PANTHER MAHOGUNIN 243 372 IPR045194 GO:0061630
Ahy2g2671 375 MobiDBLite consensus disorder prediction 1 41 - -
Ahy2g2671 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 238 - -
Ahy2g2671 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 243 372 - -
Ahy2g2671 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 366 IPR013083 -
Ahy2g2671 375 PANTHER MAHOGUNIN 1 238 IPR045194 GO:0061630
Ahy2g2671 375 MobiDBLite consensus disorder prediction 26 40 - -
Ahy2g2671 375 MobiDBLite consensus disorder prediction 222 239 - -
Ahy2g2671 375 SUPERFAMILY RING/U-box 316 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2671 Ahy-Chr2 102742344 102745874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2671 87 336 C3H Transcription Factor Family AT3G09770 60.547 7.38e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2671 - - aip:107626498 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3088 12 120340269 120343799 Ahy2g2671 2 102742344 102745874 hybridization
Ahy16g1596 16 40787224 40790087 Ahy2g2671 2 102742344 102745874 PCT
Ahy6g1435 6 29597607 29600467 Ahy2g2671 2 102742344 102745874 PCT
Ahy2g2671 2 102742344 102745874 Ahy16g1596 16 40787224 40790087 PCT
Ahy2g2671 2 102742344 102745874 Ahy6g1435 6 29597607 29600467 PCT