Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2653 ATGTCTACCTCTGCAGCTTCTCTTGCTCTTCCAACCCTATCACTTCGAACCCGACAACCCCTCTCTTCTTCTCCTCCACAATGCTTCGCTTCTTTTTCCTTCAACCCCACCAAATCCGCTTCCATTTCCACCACTTTCCTTCCTCTTCGTCCAACCAGGTTCGTTTCAAATGTCGCTCTTTCCTCCCAATTCGACCAGGACGAAGAGATTCTCAGCGATGGAGATGACCGCAGCTTCTCCCCTGACCTCAAGCTCTTCGTTGGCAACCTTCCTTTCAGTGTTGACAGCGCCCAACTCGCTGAGCTCTTTGAAAGTGCTGGTACCGTTGAAGTCGTTGAGGTGATTTATGATAAGATGAGTGGAAGAAGCAGGGGCTTTGGTTTTGTGACCATGTCTTCGATTGAGGAAGCTGAAGCTGCTAAACAACAATTCGATGGCTATGAGCTAGATGGGAGGGCACTGAGAGTGAATTCTGGACCACCTCCTGCTAAGAATGAGGGTTCCCGTTTCAGATCTCCTTCTAGGGGTGGTTTCTCTTCAGATAACGGAAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACCACTTAGCACTTGAGAACTTGTTTCGTGAACAAGGAAAAGTTTTGGAGGCCAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGATTTGTGACTTACAGCAGCCCTGAAGAGGTCAATAGTGCTATTGAATCCCTAGATGGCGCGGACTTGAATGGCAGAGCTATTAGAGTTTCTTTAGCAGATTCTAAGCCAAAGCGCCCGTTTTGA 807 0.4783 MSTSAASLALPTLSLRTRQPLSSSPPQCFASFSFNPTKSASISTTFLPLRPTRFVSNVALSSQFDQDEEILSDGDDRSFSPDLKLFVGNLPFSVDSAQLAELFESAGTVEVVEVIYDKMSGRSRGFGFVTMSSIEEAEAAKQQFDGYELDGRALRVNSGPPPAKNEGSRFRSPSRGGFSSDNGNRVHVGNLAWGVDHLALENLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVNSAIESLDGADLNGRAIRVSLADSKPKRPF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2653 268 Gene3D - 58 181 IPR012677 -
Ahy2g2653 268 Gene3D - 182 267 IPR012677 -
Ahy2g2653 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Ahy2g2653 268 SUPERFAMILY RNA-binding domain, RBD 79 182 IPR035979 GO:0003676
Ahy2g2653 268 SMART rrm1_1 185 258 IPR000504 GO:0003723
Ahy2g2653 268 SMART rrm1_1 84 157 IPR000504 GO:0003723
Ahy2g2653 268 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 268 - -
Ahy2g2653 268 CDD RRM_HP0827_like 84 157 - -
Ahy2g2653 268 PANTHER OS02G0815200 PROTEIN 1 268 - -
Ahy2g2653 268 MobiDBLite consensus disorder prediction 157 181 - -
Ahy2g2653 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Ahy2g2653 268 SUPERFAMILY RNA-binding domain, RBD 179 266 IPR035979 GO:0003676
Ahy2g2653 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Ahy2g2653 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2653 Ahy-Chr2 102544859 102547089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2653 85 266 Eukaryotic Initiation Factors Gene Family AT4G34110 26.486 2.98e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2653 - - gmx:100786275 362.459