Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2613 ATGGAGGAGGTTCAATTAGAGGAACAACAACATCAACTTCTTGTTAAAGGCAAACGAAGCAAGCGGCCGCGGCCGCCTTATTCGCCTTCGCCATCACCACCACCACCACTTGAATTTGCACCAATCATCCTCAAAAGAAACAACAACAACATGATGATGATGCCACCACCAACTACTAGTAATAGTGCAACTACTAGCACAACATTAGATGATGAAAACATGGCTTATTGTCTCATTCTATTGGCACAAGGACACCACCACCATCATCATCATCATAATAAAGCATCATCATCATCATCAGCACCATCATCACATCATGATGATCATCATGAGAAAAAGAATATCTACCAATGCAAGACGTGTAACAAATCATTCCCTTCATCTCAAGCACTTGGTGGACATAGAGCTAGCCACAAGAAATTATTATTACCAAACAACAAATCAAAGAGAAATAATAATAATGCTTATGACCATGATCATGAATTAGAGGACCTCAACACAACAACAACAACAACAAAAACAACAAGCACCATGCTCTCGTTGCAAGTATCATCATCAAATACCACAATAATAACAAAAAGAATTAGTACTAATAATAATAGTGCTAATAATAGTAGAAAATGCAAGCTACATGAATGTTCTATTTGTGGTGCTGGATTCTCATCCGGCCAAGCATTAGGGGGTCATATGAGAAGGCATAGAAATTTTGATGAAGGTGACAAAAACAAGAAACCAAGGAATCATTTTTTGAAGCTGGATTTGAATCTTCCAGCATCACCGGAAGATCATGATCAAAGAGAATCATCTAAGTTCCCATTTCAAATAAGGGAGAAAGTTATTGTCTTCTCTTCTTCTGCACCTTCTTTGGTGGATTGTCATTACTGA 885 0.3797 MEEVQLEEQQHQLLVKGKRSKRPRPPYSPSPSPPPPLEFAPIILKRNNNNMMMMPPPTTSNSATTSTTLDDENMAYCLILLAQGHHHHHHHHNKASSSSSAPSSHHDDHHEKKNIYQCKTCNKSFPSSQALGGHRASHKKLLLPNNKSKRNNNNAYDHDHELEDLNTTTTTTKTTSTMLSLQVSSSNTTIITKRISTNNNSANNSRKCKLHECSICGAGFSSGQALGGHMRRHRNFDEGDKNKKPRNHFLKLDLNLPASPEDHDQRESSKFPFQIREKVIVFSSSAPSLVDCHY* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2613 294 MobiDBLite consensus disorder prediction 1 40 - -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 24 40 - -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 87 112 - -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 1 15 - -
Ahy2g2613 294 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Ahy2g2613 294 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Ahy2g2613 294 SUPERFAMILY beta-beta-alpha zinc fingers 113 139 IPR036236 -
Ahy2g2613 294 SMART c2h2final6 116 138 IPR013087 -
Ahy2g2613 294 SMART c2h2final6 211 233 IPR013087 -
Ahy2g2613 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Ahy2g2613 294 Gene3D Classic Zinc Finger 90 177 - -
Ahy2g2613 294 Gene3D Classic Zinc Finger 184 269 - -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 230 246 - -
Ahy2g2613 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 128 162 - -
Ahy2g2613 294 MobiDBLite consensus disorder prediction 227 246 - -
Ahy2g2613 294 PANTHER ZINC FINGER PROTEIN ZAT5 49 294 - -
Ahy2g2613 294 PANTHER ZINC FINGER PROTEIN ZAT5 49 294 - -
Ahy2g2613 294 SUPERFAMILY beta-beta-alpha zinc fingers 209 235 IPR036236 -
Ahy2g2613 294 Pfam C2H2-type zinc finger 116 140 - -
Ahy2g2613 294 Pfam C2H2-type zinc finger 211 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2613 Ahy-Chr2 102229244 102230388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2613 13 294 C2H2 Transcription Factor Family AT5G03510 34.416 7.30e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy2g2613 zf-C2H2_6 1.70E-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2613 - - adu:107476344 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g3028 12 119827169 119828313 Ahy2g2613 2 102229244 102230388 hybridization
Ahy16g1696 16 59206202 59207612 Ahy2g2613 2 102229244 102230388 PCT
Ahy6g1521 6 47870659 47872090 Ahy2g2613 2 102229244 102230388 PCT
Ahy2g2613 2 102229244 102230388 Ahy16g1696 16 59206202 59207612 PCT
Ahy2g2613 2 102229244 102230388 Ahy6g1521 6 47870659 47872090 PCT