Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2576 ATGGATTGGAATAATAATGGCAGCACTAGATCCTTTGTTCCTCGACCTGATTCTTCTTTCAGCTTCCTCTACAACTATACCTACACCAACCCTTACCCAGGAATAGAAATGAAACAAGGAGGATCATCAGCAATGGTGGAGGGTCCATCATCATCAGCAACATTATCAATGGAGAAAATGAACAACAACAACAACAACTTAATGATGGAGAAGAAAAAGAGGCTAACAAATGAACAGCTGGAGTCACTAGAAAGAAGCTTCCAGAAGGAAATAAAGTTGGATCCTGATCGGAAGATGAAGCTATCAAAGGAATTAGGGCTTCAACCTCGCCAAATTGCTGTGTGGTTCCAAAATAGACGTGCAAGGTGGAAGGCTAAGCAACTTGAGCATTTGTATGATTCTCTCAAACAAGAGTTTGATCTCATTTCCAAGGAGAAACAAAAGCTTCAACAAGAGGTAATGAAATTGAAGGGAATACTGAGAGATCATCAAGGTTGTAGAACTACTCAGATATCAAATTACACTGAAATCTCTGGCGGAGGTGGTGGTGGTGGTGATGAGACTACTGTAGAAAGCACTTCTGAGGCCCTACGCTGTTCCAACACCAACAAATCATCATCAATTTCAAGAGCTACTGCTTCCATTGTTCATAATCATAATAATAATAATAATAATAATGGAAATTGCTCTTTCACTGTTGAAGACTACAACACTACAGTTCCACCAACAGTTCTTCCCTATTGGCCTGCTGTTCCTTATTACCCTTAA 768 0.3984 MDWNNNGSTRSFVPRPDSSFSFLYNYTYTNPYPGIEMKQGGSSAMVEGPSSSATLSMEKMNNNNNNLMMEKKKRLTNEQLESLERSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEFDLISKEKQKLQQEVMKLKGILRDHQGCRTTQISNYTEISGGGGGGGDETTVESTSEALRCSNTNKSSSISRATASIVHNHNNNNNNNGNCSFTVEDYNTTVPPTVLPYWPAVPYYP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2576 255 Pfam Homeodomain 71 124 IPR001356 GO:0003677
Ahy2g2576 255 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Ahy2g2576 255 CDD homeodomain 71 127 IPR001356 GO:0003677
Ahy2g2576 255 Pfam Homeobox associated leucine zipper 126 160 IPR003106 GO:0006355|GO:0043565
Ahy2g2576 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 241 IPR045224 GO:0003700
Ahy2g2576 255 PRINTS Lambda-repressor HTH signature 106 122 IPR000047 GO:0003677
Ahy2g2576 255 PRINTS Lambda-repressor HTH signature 97 106 IPR000047 GO:0003677
Ahy2g2576 255 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Ahy2g2576 255 Gene3D - 70 131 - -
Ahy2g2576 255 Coils Coil 118 152 - -
Ahy2g2576 255 SUPERFAMILY Homeodomain-like 56 128 IPR009057 -
Ahy2g2576 255 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 241 - -
Ahy2g2576 255 Coils Coil 66 86 - -
Ahy2g2576 255 SMART HOX_1 69 130 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2576 Ahy-Chr2 101936970 101939238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2576 1 156 Homeobox Transcription Factor Family AT5G03790 52.727 3.62e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy2g2576 Homeodomain 3.70E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2576 - - aip:107628062 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2991 12 119534895 119537163 Ahy2g2576 2 101936970 101939238 hybridization
Ahy2g2576 2 101936970 101939238 Ahy6g1538 6 53917749 53919211 PCT