Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2538 ATGGCGGAAGAACATCCATGCCAAGCTCCTGAAGGTCACAGGCTCTGTGTCAACAACTGCGGGTTTTTCGGTAGCTCAGCCACCATGAATCTCTGCTCCAAATGCTTCAGAGAACAAGAATCCGCAAAATCTACGATCGAGAACGCTCTCTCCACCGCCACAGCCACCGCAACCTCCTCCGTCGCCGCCTTTCCATCTCCGTCACCGTCCACGTCGTCTTCTCCGGCGCCAACGCCAGCCGCCGTCGAATTCTTTGTCCCTCAACCGGTTGAGCTAGAAGCTTCGAGCTCCGTAACGGTTTCTGTAACGACCAGCTCGAATCCCGGAGCTCCGATTCAGCCGAACCGTTGCGCTACATGCCGTAAACGAGTCGGGTTGACCGGGTTCAAGTGCAGGTGCGGTGTCACGTTCTGCGGGGCCCACAGGTACCCGGAAAAACACGCGTGCGCTTTCGATTTTAAGACGGTGGGAAGGGAGGAGATAGCACGTGCCAACCCCGTGATCAAGGCGGAGAAACTCGATAGGATCTGA 531 0.5687 MAEEHPCQAPEGHRLCVNNCGFFGSSATMNLCSKCFREQESAKSTIENALSTATATATSSVAAFPSPSPSTSSSPAPTPAAVEFFVPQPVELEASSSVTVSVTTSSNPGAPIQPNRCATCRKRVGLTGFKCRCGVTFCGAHRYPEKHACAFDFKTVGREEIARANPVIKAEKLDRI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2538 176 Gene3D - 93 172 IPR035896 -
Ahy2g2538 176 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Ahy2g2538 176 SUPERFAMILY AN1-like Zinc finger 110 171 IPR035896 -
Ahy2g2538 176 ProSiteProfiles Zinc finger AN1-type profile. 111 157 IPR000058 GO:0008270
Ahy2g2538 176 Pfam AN1-like Zinc finger 117 153 IPR000058 GO:0008270
Ahy2g2538 176 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Ahy2g2538 176 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 176 - -
Ahy2g2538 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 44 - -
Ahy2g2538 176 SMART AN1_Zf_4 117 154 IPR000058 GO:0008270
Ahy2g2538 176 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 176 - -
Ahy2g2538 176 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Ahy2g2538 176 Gene3D - 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2538 Ahy-Chr2 101559216 101561200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2538 1 176 C2H2 Transcription Factor Family AT3G52800 50.282 4.06e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2538 - - gmx:100813749 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2954 12 119157141 119159125 Ahy2g2538 2 101559216 101561200 hybridization
Ahy16g1855 16 95945668 95947788 Ahy2g2538 2 101559216 101561200 PCT
Ahy6g1614 6 70983289 70985029 Ahy2g2538 2 101559216 101561200 PCT