Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2251 ATGAGTGATAACATAGTCTCATCAACACAAACCTTTAATATTAAGTACAACAATACTATCACATTTTCTTCAAGTGGAATCTCTTCTTCTTCTTCTCATCATCATAATCATCAAGATTATGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACCGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGGTACTTGCATAAGTTTAGGGAATTGGAATGTGAAAAAGCTAATAATCAAAATCATAATAAGGTTATTAATACTACTAATAGAAATAATAATAATCTTATTGAAAAATATAATAGTTATGGGGGTGATGATGATGAAGACTAG 522 0.3525 MSDNIVSSTQTFNIKYNNTITFSSSGISSSSSHHHNHQDYGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKFRELECEKANNQNHNKVINTTNRNNNNLIEKYNSYGGDDDED* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2251 173 SUPERFAMILY Histone-fold 46 152 IPR009072 GO:0046982
Ahy2g2251 173 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 26 158 - -
Ahy2g2251 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Ahy2g2251 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Ahy2g2251 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Ahy2g2251 173 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Ahy2g2251 173 Gene3D Histone, subunit A 37 165 IPR009072 GO:0046982
Ahy2g2251 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ahy2g2251 173 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2251 Ahy-Chr2 98637224 98638168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2251 28 142 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.441 1.62e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ahy2g2251 CBFD_NFYB_HMF 1.80E-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2251 K08065 - mnt:21392404 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2598 12 115454694 115455698 Ahy2g2251 2 98637224 98638168 hybridization