Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g2123 ATGGGTAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAGTGCTGGTATCAACAAAACTATTGAACGATACCAACGCTGCTCTTTTACTCCTCAAGATGAGCATGTTGAATGTGAAACTCAGAGCTGGTACCAGGAGGTATCAAAGCTAAAGGCAAAGTATGAGTCTCTACAAAGGACTCAGAGGCACTTGCTTGGGGAAGATCTTGGACCATTGAGCATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGTGCTTTAGCACAGGCCAGGCAGAGGAAGACACAAATTATGATCGAACAAATGGAAGAGCTGCGTAGGAGGGAGCGTCATCTTGGAGATATGAATAAGCAACTTAGGCTCAAGCTTGAGGCAGAAGGGTTCAATCTAAAAGCTATGGAAAGCTTGTGGAGTTCAACTTCAGCTGCTGCAAACAGCAACTTTACCTTTCAGCCTTCTCAAACCAATAACCCTATGGATTGCCAACCTGAGCCTTTCTTACAAATAGGGTACCATCACTATGTTCAACCTGAAGCATCTAATAATGTTGCTAAGAACATGGGTTGTGAGACCAATAACTTCATGCATGGATGGGTGCTTTGA 741 0.4359 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLWSSTSAAANSNFTFQPSQTNNPMDCQPEPFLQIGYHHYVQPEASNNVAKNMGCETNNFMHGWVL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g2123 246 Coils Coil 119 142 - -
Ahy2g2123 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy2g2123 246 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Ahy2g2123 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 231 - -
Ahy2g2123 246 Coils Coil 148 168 - -
Ahy2g2123 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Ahy2g2123 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Ahy2g2123 246 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy2g2123 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy2g2123 246 PANTHER MADS BOX PROTEIN 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g2123 Ahy-Chr2 96686019 96693088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g2123 1 246 MADS-box Gene Family AT2G45650 64.173 3.85e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy2g2123 K-box 1.20E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g2123 K09264 - gmx:100810549 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2457 12 113236871 113243640 Ahy2g2123 2 96686019 96693088 hybridization