Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy2g1939 ATGAAGGTTCACACGTTTAATGTTGTAGTCCTTTACTGTATGCTCTTAATATGCACTTGTTATGGCTTCAACCCCAAACTATCGTTCTATAATTCTTCCATAGTTGATGCAAATGCAGAACAATGGCAACCAGCATCAGCTACATGGTATGGACCGCCAGATGGCGCTGGAACAGATGGTGGTGCTTGTGGATATGGTAGTAGTGTGGGGAATCCTCCACTCTCTAAATTGGTATCAGCTGGTGGCCCTAATATTTTCAACAATGGCGAAGGATGTGGCGCTTGTTATGAGGTGAAATGCACAGAAAATGAAGCATGCTCTGGTGAAACAGTGACAGTAATGATATCAGATCAATGCCCTGGATGTCCAGCCACTCATTTCGATCTCAGTGGCTTTGCTTTTGGTTCATTGGCAAAACCAGGGCAGCAAGATAATCTTCGCAATGCTGGACGCATAAACCTTCAATATCAAAGGGTTTCATGCTCATTTGGGCAGCCAATAGTATTCACCATAGATAATGGGGCAAACCAATACTACTTTGCAACCGAAATTGAATATGAAAACGGGGAAGGAAATCTTGTGGATGTAGAATTGAAGCAAGCAAATCAAGATTCATGGATTCCAATGAAACGTTTATGGGGTGCAAGATGGGTTCTCAACCTTGGTTCTTTAATGCAACCTCCATTTTCTCTTATGCTCACTGAGACTTCTGTCAATGGCTCCAGCAAGACCATTGAAGCTAACAATGTTATCCCTGCTGGTTGGCAACCTGGCCAAGTTATTCGATCAGCCATAAACTTTAATAATTAG 810 0.4247 MKVHTFNVVVLYCMLLICTCYGFNPKLSFYNSSIVDANAEQWQPASATWYGPPDGAGTDGGACGYGSSVGNPPLSKLVSAGGPNIFNNGEGCGACYEVKCTENEACSGETVTVMISDQCPGCPATHFDLSGFAFGSLAKPGQQDNLRNAGRINLQYQRVSCSFGQPIVFTIDNGANQYYFATEIEYENGEGNLVDVELKQANQDSWIPMKRLWGARWVLNLGSLMQPPFSLMLTETSVNGSSKTIEANNVIPAGWQPGQVIRSAINFNN* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy2g1939 269 Pfam Lytic transglycolase 79 156 IPR009009 -
Ahy2g1939 269 Pfam Expansin C-terminal domain 167 252 IPR007117 -
Ahy2g1939 269 Gene3D - 28 162 IPR036908 -
Ahy2g1939 269 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Ahy2g1939 269 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Ahy2g1939 269 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Ahy2g1939 269 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Ahy2g1939 269 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Ahy2g1939 269 SUPERFAMILY PHL pollen allergen 166 260 IPR036749 -
Ahy2g1939 269 SUPERFAMILY Barwin-like endoglucanases 37 163 IPR036908 -
Ahy2g1939 269 Gene3D - 163 268 IPR036749 -
Ahy2g1939 269 SMART dpbb_1 78 156 IPR007112 -
Ahy2g1939 269 PANTHER EXPANSIN-LIKE PROTEIN B1 7 269 - -
Ahy2g1939 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 166 IPR007112 -
Ahy2g1939 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 263 IPR007117 -
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Ahy2g1939 269 PANTHER EXPANSIN-B3 7 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy2g1939 Ahy-Chr2 93612149 93615096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy2g1939 23 267 Expansin Gene Family AT1G65680 48.594 7.73e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy2g1939 - - gmx:100786475 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2245 12 109118083 109121461 Ahy2g1939 2 93612149 93615096 hybridization
Ahy16g2723 16 139770158 139773737 Ahy2g1939 2 93612149 93615096 PCT
Ahy6g2339 6 106815890 106819927 Ahy2g1939 2 93612149 93615096 PCT
Ahy2g1939 2 93612149 93615096 Ahy16g2723 16 139770158 139773737 PCT
Ahy2g1939 2 93612149 93615096 Ahy6g2339 6 106815890 106819927 PCT